View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_3 (Length: 473)
Name: NF5666_low_3
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 42311644 - 42312104
Alignment:
| Q |
1 |
cccaacactaaattaaaagaacagaaaagggataaggaattccacatgggagattcaaaagaaactagctagaacccttaccttttcctccaaatgaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
42311644 |
cccaacactaaattaaaagaacagaaaagggataaggaattcctcatgggagattcaaaagaaactag----aaccattaccttttcctccaaatgaact |
42311739 |
T |
|
| Q |
101 |
ccaaggcgttgatagaccttgttatattcagccctactaacttcacaaattttatgccatgcttcgcgatacttgggatcccctctctgaaatcaaaatt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42311740 |
ccaaggcgtcgatagaccttgttatattcagccctactaacttcacaaattttatgccatgcttcgcgatacttgggatcccctctctgaaatcaaaatt |
42311839 |
T |
|
| Q |
201 |
caggcatacaaaaatgtataaccaattccctgtgatctagcaaat-----------agaagagaaaaaacatgaagtaaaaatttacctggagcttgacc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42311840 |
caggcatacaaaaatgtataaccaattccctgtgatctagcaaataggtgacaaaaagaagagaaaaaacatgaagtaaaaatttacctggagcttgacc |
42311939 |
T |
|
| Q |
290 |
actgactgacgtgccttggttttaaaatcaggatcactatcatacttggattttgaggccttatagaattcctaaaaatgcaccaactccaataatttca |
389 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
42311940 |
actgactgacgtgccttggttttaaaatcgggatcactatcatacttggattttgaggtcttatagaattcctaaaaatgcaccaacttaaataatttca |
42312039 |
T |
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| Q |
390 |
aaataactaaaacaattttccatcaaagctaaataacaatgaggaataggatactagctgtatct |
454 |
Q |
| |
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| T |
42312040 |
aaataactaaaacaattttccatcaaagctgaataacaatgaggagttggatactagctgtatct |
42312104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 47976378 - 47976541
Alignment:
| Q |
268 |
aaaatttacctggagcttgaccactgactgacgtgccttggttttaaaatcaggatcactatcatacttggattttgaggccttatagaattcctaaaaa |
367 |
Q |
| |
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||||||||||||||||| ||| |||||| | ||||||| | || |||||||||||||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
47976378 |
aaaatttacctggagctcgactactgacagctgtgcctttttcttgaaatcaggatcactatcaaacttcaattttgaggccttatagaatgcctaaaaa |
47976477 |
T |
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| Q |
368 |
tgcaccaactccaataatttcaaaataactaaaacaattttccatcaaagctaaataacaatga |
431 |
Q |
| |
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| T |
47976478 |
tgcaccaactccaataatttcagaataagtaaaataattttccatcgaagctaaataacgatga |
47976541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 47976151 - 47976333
Alignment:
| Q |
69 |
ctagaacccttaccttttcctccaaatgaactccaaggcgttgatagaccttgttatattcagccctactaacttcacaaattttatgccatgcttcgcg |
168 |
Q |
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|||||||||||||| ||||||||||| | | ||||||||| ||||||||||||||| |||||| |||||||| || ||||||| | |||||| ||| |
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| T |
47976151 |
ctagaacccttaccatttcctccaaacggattccaaggcgctgatagaccttgttaaattcagtcctactaatatcgcaaatttgtttccatgccgtgcg |
47976250 |
T |
|
| Q |
169 |
atacttggga---tcccctctctgaaatcaaaattcaggcatac-aaaaatgtataaccaattccctgtgatctagcaaatag |
247 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
47976251 |
atacttgggatcctccccactctgaaatcaaaattcaggcatacaaaaaatgtaaaaccaattccccatgaccttgcaaatag |
47976333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 51566658 - 51566497
Alignment:
| Q |
69 |
ctagaacccttaccttttcctccaaatgaactccaaggcgttgatagaccttgttatattcagccctactaacttcacaaattttatgccatgcttcgcg |
168 |
Q |
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|||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | |||||| ||| |
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| T |
51566658 |
ctagaatccttaccatttcctccaaacgaattccaaggcgttgatagaccttgttaaattcagtcctactaacatcacaaatttgtttccatgccgtgcg |
51566559 |
T |
|
| Q |
169 |
atacttgggatcccctctctgaaatcaaaattcaggcatac-aaaaatgtataaccaattcc |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||| |
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|
| T |
51566558 |
atacttgggatcccctccctgaaatcaaaattcaggcagacaaaaaatgtaaaaccaattcc |
51566497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 431
Target Start/End: Complemental strand, 51566443 - 51566267
Alignment:
| Q |
254 |
aaaaacatgaagtaaaaatttacctggagcttgaccactgactgacgtgccttggttttaaaatcaggatcactatcatacttggattttgaggccttat |
353 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||||| |||| || |||||| |||||||||||||| || | ||||||||||||||| |
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| T |
51566443 |
aaaaacttgaagtaaaa-tttacctggagcttgaccactgactgctgtgcatttaacttaaaagcaggatcactatcaaacctcaattttgaggccttat |
51566345 |
T |
|
| Q |
354 |
agaattcctaaaaatgca-ccaactccaataatttcaaaataactaaaacaattttccatcaaagctaaataacaatga |
431 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
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| T |
51566344 |
agaatgcctaaaaatgcacccaactccaataatttcagaataagtaaaataatttaccatcaaagctaaa-aacaatga |
51566267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 34030507 - 34030367
Alignment:
| Q |
69 |
ctagaacccttaccttttcctccaaatgaactccaaggcgttgatagaccttgttatattcagccctactaacttcacaaattttatgccatgcttcgcg |
168 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||| |||||||||| |||||||| | ||| |
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| T |
34030507 |
ctagaacccttaccatttcctccagttgaactccaagacgttgatagaccttgtcaaactcagccctactaatatcacaaatttgttgccatgccttgcg |
34030408 |
T |
|
| Q |
169 |
atacttgggatcccctctctgaaatcaaaattcaggcatac |
209 |
Q |
| |
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|||| ||| |||||| |||||| || |||||| | |||||| |
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| T |
34030407 |
atacctggtatccccactctgagataaaaattaatgcatac |
34030367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 5076347 - 5076254
Alignment:
| Q |
69 |
ctagaacccttaccttttcctccaaatgaactccaaggcgttgatagaccttgttatattcagccctactaacttcacaaattttatgccatgc |
162 |
Q |
| |
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||||| |||||||| |||||||||| |||||||||| | |||||||| ||||| | |||||||||||||| |||||||||| |||||||| |
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| T |
5076347 |
ctagaccccttaccatttcctccaattgaactccaatacattgatagatcttgtcgaactcagccctactaacatcacaaatttgttgccatgc |
5076254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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