View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_4 (Length: 458)
Name: NF5666_low_4
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 37 - 423
Target Start/End: Complemental strand, 52583887 - 52583507
Alignment:
| Q |
37 |
tccttagcaaagcaaaccaaaatcacggctacaaatatatgtgtatatatatttaaaaatatgaatgacctcttggtaggacaatgaatgatgttgagca |
136 |
Q |
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| T |
52583887 |
tccttagcaaagcaaatcaaaatcacggctacaaatatat------atatatttaaaaatatgaatgacctcttggtaggacaatgaatgatgtggagca |
52583794 |
T |
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| Q |
137 |
atgatggaattcaattttctcttgagtttttcaccttttaatctgaaatgcttcaaaggggaatagtaattggcaacatcctcacaagaataagtagaag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52583793 |
atgatggaattcaattttctcttgagtttttcaccttttaatctgaaatgcttcaaaggggaatagtaattggcaacatcctcacatgaataagtagaag |
52583694 |
T |
|
| Q |
237 |
gagttggatattcagaggcaacagcaacaagattaagagataataacaagtaaaaagaaacaagtctagaaaagaagcatttccaggagaaatgaaaaca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583693 |
gagttggatattcagaggcaacagcaacaagattaagagataataacaagtaaaaagaaacaagtctagaaaagaagcatttccaggagaaatgaaaaca |
52583594 |
T |
|
| Q |
337 |
cgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttgttggattgaatgaaattagaatgag |
423 |
Q |
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| T |
52583593 |
cgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttgttggattgaatgaaattagaatgag |
52583507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 37253782 - 37253926
Alignment:
| Q |
228 |
aagtagaaggagttggatattcagaggcaacagcaacaagattaagagataataacaagtaaaaagaaacaagtctagaaaagaagcatttccaggagaa |
327 |
Q |
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| T |
37253782 |
aagtagaaggagttggatattcagaggcaacaacaacaagattaagagataataacaagtaaaaagaaacaagtctataaaacaagcatttccaagataa |
37253881 |
T |
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| Q |
328 |
atgaaaacacgttagccacatttgttccctaaaaaatgaaataat |
372 |
Q |
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| T |
37253882 |
attaaaacacgttagccacatttgttccattgaaaatgaaataat |
37253926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 37254172 - 37254228
Alignment:
| Q |
367 |
aataataggtgttagctttacaattgtgtttgttggattgaatgaaattagaatgag |
423 |
Q |
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| T |
37254172 |
aataataggtgttagctttgcaattgtgtttgttggatagaatgaaattagaatgag |
37254228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 28086831 - 28086880
Alignment:
| Q |
228 |
aagtagaaggagttggatattcagaggcaacagcaacaagattaagagat |
277 |
Q |
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| T |
28086831 |
aagtagaaggagttggatatttagaggcaacaacaacaagattaagagat |
28086880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 35477891 - 35477940
Alignment:
| Q |
228 |
aagtagaaggagttggatattcagaggcaacagcaacaagattaagagat |
277 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
35477891 |
aagtagaaggagttggatatttagaggcaacaacaacaagattaagagat |
35477940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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