View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_5 (Length: 454)
Name: NF5666_low_5
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 13866526 - 13866080
Alignment:
| Q |
1 |
gtgtaatgtttttt-atatatattcaagattgtgttgaaattccatatccatgttcatcgcgacaaggcatgcacgtataaactagaacaagaatggtac |
99 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13866526 |
gtgtaatgtttttttatatatattcaagattgtgttgaaattccatatccatgttcatcgcgacaaggcatgcacgtataaactagaacaagaatggtac |
13866427 |
T |
|
| Q |
100 |
cttatagacatcaccaaagaatagtacctaggaaaaacatccatgttgaaaataaatcagatgaaacgtgaggaaggtataaacgtgtagggaagattag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13866426 |
cttatagacatcaccaaagaatagtacctaggaaaaacatccatgctgaaaataaatcagatgaaacgtgaggaaggtgtaaacgtgtagggaagattag |
13866327 |
T |
|
| Q |
200 |
actaaaatgacaaagtctaagtcttccataaaccacacttaattaaatcacattctatataaaaataaaacatttaaacaatttcccatataccctaccc |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13866326 |
actaaaatgacaaagtctaagtcttccataaaccacacttaattaaatcacattctatataaaaataaaacatttaaacaatttcccatataccctaccc |
13866227 |
T |
|
| Q |
300 |
cctcaaatattttaatcatgctttcatcaccatcaagaactaaaccgttcatatatttcccttctaaaaattccaccatcaatttcataataatcatgtt |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13866226 |
cctcaaatattttaatcatgctttcatcaccatcaagaactaaaccgttcatatatttcccttctaaaaattccaccatcaatttcataataatcatgtt |
13866127 |
T |
|
| Q |
400 |
catctctcatttttcctagctagaactactatactattgttcatctc |
446 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13866126 |
catctctcatttttcctagctagaactactatactatcgttcatctc |
13866080 |
T |
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