View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_6 (Length: 449)
Name: NF5666_low_6
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 49508319 - 49508753
Alignment:
| Q |
1 |
atctcaaaggtgcaacgagtctcggttaacattatagtgtgatctatct-atatacttgttggttgtaatgttcgtattgcatggcacttgtgagttcat |
99 |
Q |
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| T |
49508319 |
atctcaaaggtgcaacgagtctcggttaacattatagtgtgatctatcttatatacttgttggttgtaatgttcgtattgcatggcacttgtgagttcat |
49508418 |
T |
|
| Q |
100 |
ttaaaatgatgccaattgttaacaaaatttaaggttcatgatattataactctcactatctatatcgtacatttttataagaaaataacaaatcatactc |
199 |
Q |
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| T |
49508419 |
ttaaaatgatgccaattgttaacaaaatttaaggttcatgatattataactctcactatctatatcgtacatttttataagaaaataacaaatcatactc |
49508518 |
T |
|
| Q |
200 |
aatccatgattttgatcataggataggagtaactagtatgttttaaggatcatgtaattaaannnnnnnngaacttcaaattttatagtagtagatttgt |
299 |
Q |
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| T |
49508519 |
aatccatgattttgatcataggataggagtaactagtatg-tttaaggatcatgtaattaaatttttttttaacttcaaattttatagtagtagatttgt |
49508617 |
T |
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| Q |
300 |
gataaatacatcaaagattcctgcttaaaacaaggtgttacttgatagaattaatcagcaatgataattatttacttgaatgcatgcacattcagtttct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49508618 |
gataaatacatcaaagattcctgcttaaaacaaggtgttacttgatagaattaatcagcaatgataattatttacttgaatgcatgcacattcagtttct |
49508717 |
T |
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| Q |
400 |
ctccacatggttaggtggtgagaattggaggaaggt |
435 |
Q |
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| T |
49508718 |
ctccacatggttaggtggtgagaattggaggaaggt |
49508753 |
T |
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