View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5666_low_7 (Length: 444)
Name: NF5666_low_7
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 18686179 - 18685759
Alignment:
| Q |
9 |
agcaaagggcatcttatttctctttggtggtgctgctnnnnnnnttccaaagacttcccaaaatctcagggtctggtctgcggctgcggctgcagatgcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18686179 |
agcaaagggcatcttatttctctttggtggtgctgctgggggggttccaaagacttcccaaaatctcagggtctggtctgcggctgcggctgcagatgcc |
18686080 |
T |
|
| Q |
109 |
acagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatacttccaaagggtaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18686079 |
acagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatacttccaaagggtaa |
18685980 |
T |
|
| Q |
209 |
gctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaacagaattcacacg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
18685979 |
gctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacctgcgatcccgtatcaacagaattcatgcg |
18685880 |
T |
|
| Q |
309 |
ttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaagccagtgccttc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18685879 |
ttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcctccaccagaagccaatagattaccctgaaaaggacaccaagccagtgccttc |
18685780 |
T |
|
| Q |
409 |
acagcagctttgtgttcatca |
429 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18685779 |
acagcagctttgtgttcatca |
18685759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 425
Target Start/End: Original strand, 43526366 - 43526691
Alignment:
| Q |
100 |
gcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatacttcc |
199 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| | ||| | |||||||||||| |||||||||| || || || || |||| ||| ||||||||||||| |
|
|
| T |
43526366 |
gcagatgccactgtacacccatctggactctgcgccatatacagcaccctcgaagtgtgaccattgagatctgccattttcaccatagaaggatacttcc |
43526465 |
T |
|
| Q |
200 |
aaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaacaga |
299 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| ||||| ||||| || | | |||| |||| |||||||||||||||||| || |||||||| |
|
|
| T |
43526466 |
aaagggtaagctggttctcggtgaaaccatgtgagctaagtagctcacgctcgttctggttccatagcagagcacatacttgcgatccagtgtcaacaga |
43526565 |
T |
|
| Q |
300 |
attcacacgttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaagcc |
399 |
Q |
| |
|
||||| | |||| || |||||||| ||||| | |||| ||||||||| | |||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
43526566 |
attcaatctcgcaccagtgtgtgtgttccacagcttaatgcaatgatcacctccacctccaccagaagccagtagattaccctgaaagggacaccaagcc |
43526665 |
T |
|
| Q |
400 |
agtgccttcacagcagctttgtgttc |
425 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
43526666 |
agtgccttcacagcagctatgtgttc |
43526691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 97 - 425
Target Start/End: Original strand, 19025601 - 19025929
Alignment:
| Q |
97 |
gctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatact |
196 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||||||||||| || |||||| ||||||||||| | |||||| || ||||||| ||| |||||||||| |
|
|
| T |
19025601 |
gctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatact |
19025700 |
T |
|
| Q |
197 |
tccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaac |
296 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
19025701 |
tccaaagggtaatttggttcttagtcaaaccatgtgagctaagaagctcgcgctcgtttttgttccagagcaaagcgcatacctctgatcccgtgtcaac |
19025800 |
T |
|
| Q |
297 |
agaattcacacgttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaa |
396 |
Q |
| |
|
||||| || ||| ||||| ||| | ||||||| ||||| | || ||||||| | | |||||||||||| || | || || |||||| |||||||| |
|
|
| T |
19025801 |
agaatccaagcgtgcacccgtgcgcatgttccacagcttaatacattgatcaccttcacctccaccagaagctaacaaatcactctgaaacggacaccac |
19025900 |
T |
|
| Q |
397 |
gccagtgccttcacagcagctttgtgttc |
425 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| |
|
|
| T |
19025901 |
gccagcgccttgacagcagctgtgtgttc |
19025929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 97 - 425
Target Start/End: Complemental strand, 20729035 - 20728707
Alignment:
| Q |
97 |
gctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatact |
196 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||||||||||| || |||||| ||||||||||| | |||||| || ||||||| ||| |||||||||| |
|
|
| T |
20729035 |
gctgcagttgccacggtacacccatctggactctgtgtcatgtacaacacccttgaggtgtgaccgttaagctcagccatcttcaccatggaaggatact |
20728936 |
T |
|
| Q |
197 |
tccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaac |
296 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
20728935 |
tccaaagggtaatttggttcttagtcaaaccatgtgagctaagaagctcgcgctcgtttttgttccagagcaaagcgcatacctctgatcccgtgtcaac |
20728836 |
T |
|
| Q |
297 |
agaattcacacgttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaa |
396 |
Q |
| |
|
||||| || ||| ||||| ||| | ||||||| ||||| | || ||||||| | | |||||||||||| || | || || |||||| |||||||| |
|
|
| T |
20728835 |
agaatccaagcgtgcacccgtgcgcatgttccacagcttaatacattgatcaccttcacctccaccagaagctaacaaatcactctgaaacggacaccac |
20728736 |
T |
|
| Q |
397 |
gccagtgccttcacagcagctttgtgttc |
425 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| |
|
|
| T |
20728735 |
gccagcgccttgacagcagctgtgtgttc |
20728707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 94 - 427
Target Start/End: Original strand, 13118899 - 13119232
Alignment:
| Q |
94 |
gcggctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggat |
193 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||| | |||| |||||||||||| |||||||| ||||| || ||| ||| ||| ||||||| |
|
|
| T |
13118899 |
gcggatgcagatgccactgtacacccatctggactctgcgccatgcacagcaccctcgaagtgtgacctctgagctccgccatcctcaccatcgaaggat |
13118998 |
T |
|
| Q |
194 |
acttccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatc |
293 |
Q |
| |
|
| ||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| || | | |||| |||| | || |||| || ||||| || || |
|
|
| T |
13118999 |
agctccaaagggtaagctggttctccgtgaaaccgtgtgagctaagaagctcacgctcgttctggttccacagcagaccagatacctgtgatccagtgtc |
13119098 |
T |
|
| Q |
294 |
aacagaattcacacgttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacac |
393 |
Q |
| |
|
|||||||| || ||| ||||| || |||||||| ||||| | ||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13119099 |
aacagaatccaagcgtgcacccgtgtgtgtgttccacagcttaatgcaacgatcacctccacctccaccagaagccaatagattagcctgaaaaggacac |
13119198 |
T |
|
| Q |
394 |
caagccagtgccttcacagcagctttgtgttcat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13119199 |
caagccagtgccttcacagcagctttgtgttcat |
13119232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 118 - 425
Target Start/End: Complemental strand, 16695022 - 16694715
Alignment:
| Q |
118 |
ccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatacttccaaagggtaagctggttct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| || ||||||| |||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
16695022 |
ccatctggactctgtgtcatgtgcagcaccctcgaggtatgacccttgagctctgccatcttcaccattgaagaatacttccataggataagctggttct |
16694923 |
T |
|
| Q |
218 |
gagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaacagaattcacacgttcacccat |
317 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||| |||||||| || | ||||||| | |
|
|
| T |
16694922 |
catggaaaccatgagagctaagaagctcaggctcatttttattccacagcagagcacatacttgcgatcccgtgtcaacagagtttaatttttcacccgt |
16694823 |
T |
|
| Q |
318 |
gcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaagccagtgccttcacagcagct |
417 |
Q |
| |
|
|||||||| ||||| | ||||| |||| | | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
16694822 |
ttgtgtgttccacagcttaatgcaacgatcaagtgcacctccaccagaagccaatagattaccctggaaaggacaccaagccagtgccttcacagcagat |
16694723 |
T |
|
| Q |
418 |
ttgtgttc |
425 |
Q |
| |
|
| |||||| |
|
|
| T |
16694722 |
tcgtgttc |
16694715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 118 - 425
Target Start/End: Complemental strand, 17669258 - 17668951
Alignment:
| Q |
118 |
ccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatacttccaaagggtaagctggttct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| || ||||||| |||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
17669258 |
ccatctggactctgtgtcatgtgcagcaccctcgaggtatgacccttgagctctgccatcttcaccattgaagaatacttccataggataagctggttct |
17669159 |
T |
|
| Q |
218 |
gagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaacagaattcacacgttcacccat |
317 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||| |||||||| || | ||||||| | |
|
|
| T |
17669158 |
catggaaaccatgagagctaagaagctcaggctcatttttattccacagcagagcacatacttgcgatcccgtgtcaacagagtttaatttttcacccgt |
17669059 |
T |
|
| Q |
318 |
gcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaagccagtgccttcacagcagct |
417 |
Q |
| |
|
|||||||| ||||| | ||||| |||| | | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
17669058 |
ttgtgtgttccacagcttaatgcaacgatcaagtgcacctccaccagaagccaatagattaccctggaaaggacaccaagccagtgccttcacagcagat |
17668959 |
T |
|
| Q |
418 |
ttgtgttc |
425 |
Q |
| |
|
| |||||| |
|
|
| T |
17668958 |
tcgtgttc |
17668951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 97 - 425
Target Start/End: Original strand, 43169635 - 43169963
Alignment:
| Q |
97 |
gctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatact |
196 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| ||||||||||||| | ||||||||||| | ||| || || ||||||||||| |||||||||| |
|
|
| T |
43169635 |
gctgcagatgccactttacacccatctggactctgtgccatgtgcagcacctttgaggtgtgaccgttaaggtcagccatcttcaacatggaaggatact |
43169734 |
T |
|
| Q |
197 |
tccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaac |
296 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| ||||||||||| ||||| |||||||||| | ||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
43169735 |
tccaaagagtaagttggttctgagagaaaccgtgtgagctaagcagctcacgctcattttcgttccagagcaaagcacctacttctgatcccgtgtcaac |
43169834 |
T |
|
| Q |
297 |
agaattcacacgttcacccatgcccgtgttccatagctttacgcaacaatcacctccgcttccaccagaagccaatagattaccctgaaaaggacaccaa |
396 |
Q |
| |
|
|||||||| || ||||| || ||||||||| | ||| | || ||||||| | | |||||| ||||| |||| ||||| |||||| ||||||||| |
|
|
| T |
43169835 |
agaattcaattgtgcacccgtgtgcgtgttccacatcttaatacattgatcaccttcacctccacctgaagctaataaattacgctgaaacggacaccaa |
43169934 |
T |
|
| Q |
397 |
gccagtgccttcacagcagctttgtgttc |
425 |
Q |
| |
|
|||| |||||| | || |||| ||||||| |
|
|
| T |
43169935 |
gccaatgccttgataggagctgtgtgttc |
43169963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 97 - 304
Target Start/End: Complemental strand, 43218692 - 43218487
Alignment:
| Q |
97 |
gctgcagatgccacagtagacccatctggactctgtgtcatgtgcagcaccctcgaggtgtgaccatgaagctcggcaatcttcaacattgaaggatact |
196 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
43218692 |
gctgcagatgccactttacacccatctggactctgt--catgtgcagcacctttgaggtgtgaccattaaggtcggccttcttcaacattgaaggatact |
43218595 |
T |
|
| Q |
197 |
tccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcatttttgctccagagcaaagcacatacttgcgatcccgtatcaac |
296 |
Q |
| |
|
||||||| || || |||||||||| ||||||||||||||||||||||| | |||||||| | | ||||||||||| | |||| |||||||| ||||| |
|
|
| T |
43218594 |
tccaaagagtgagttggttctgagggaaaccatgtgagctaagaagctcacactcattttcgttacagagcaaagcgccaacttctgatcccgtgtcaac |
43218495 |
T |
|
| Q |
297 |
agaattca |
304 |
Q |
| |
|
||| |||| |
|
|
| T |
43218494 |
agagttca |
43218487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 20457096 - 20456987
Alignment:
| Q |
154 |
gtgtgaccatgaagctcggcaatcttcaacattgaaggatacttccaaagggtaagctggttctgagtcaaaccatgtgagctaagaagctcgcgctcat |
253 |
Q |
| |
|
|||||||||| || || || ||||||| |||||||||||| |||||||| || ||||| ||||| || |||||||| ||||| || ||||| | ||||| |
|
|
| T |
20457096 |
gtgtgaccattgagttctgctatcttcaccattgaaggatatttccaaagtgttagctgattctgtgtaaaaccatgagagctgagtagctccctctcat |
20456997 |
T |
|
| Q |
254 |
ttttgctcca |
263 |
Q |
| |
|
| ||| |||| |
|
|
| T |
20456996 |
tcttgttcca |
20456987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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