View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5666_low_9 (Length: 363)
Name: NF5666_low_9
Description: NF5666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5666_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 40 - 348
Target Start/End: Complemental strand, 12121357 - 12121048
Alignment:
| Q |
40 |
gaggtaggtctttaatatacatatcattaccaaatagatattgtgagaaatcaaccacttaaatcaacattaggttctttaattgattaacctcaacagt |
139 |
Q |
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| T |
12121357 |
gaggtaggtctttaatatacagatcattaccaaataaatattgtgagaaatcaaccacttaaatcaacattaggttctttaattgattaacctcaacagt |
12121258 |
T |
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| Q |
140 |
tttacatttaatacttttctaagaatcgaatataggaccttgagagtcgaaaagagttgtacgtttgatactttaatttatccaaaactatatataatac |
239 |
Q |
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| T |
12121257 |
tttacatttaatatttttctaagaatcgaatataggaccttgagagtcgagaagagttgtacgtttgatactttagtttatccaaaactatatataatac |
12121158 |
T |
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| Q |
240 |
gatttagttttc-ttgacttcaattttttccaaataatatatgaccaagggtcatgtctagttgtctactacagttatatactaaaaatatgcaagacat |
338 |
Q |
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| T |
12121157 |
gatttagttttctttgacttcaattttttccaaataatatatgaccaagggtcatgtctagttgtctactacagttatatactaaaaatatgcaagacat |
12121058 |
T |
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| Q |
339 |
gttccacatg |
348 |
Q |
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| T |
12121057 |
gttccacatg |
12121048 |
T |
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