View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5667_low_3 (Length: 479)
Name: NF5667_low_3
Description: NF5667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5667_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 186 - 400
Target Start/End: Complemental strand, 30363795 - 30363587
Alignment:
| Q |
186 |
tcttcaaacattctatccgtaggtcttcttccggttaacatttctaaaactagaattccaaagctatacatgtctccttcaattgacaacatagaaccca |
285 |
Q |
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| T |
30363795 |
tcttcaaacattttatctgtaggtcttcttccggttaacatttctaaaactagaattccaaagctatacatgtctccttcaattgacaacatagaaccca |
30363696 |
T |
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| Q |
286 |
ttccatactctgaaaattaaagtaatnnnnnnnncagttaacacccttaaattattatcaaaatgttaattgtaagcaaataaaaggaccagaaagaaaa |
385 |
Q |
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| T |
30363695 |
ttccatactctgaaaagtaa--taa----aaaaacagttaacacccttaaattattatcaaaatgttaattctaagcaaataaaatgaccagaaagaaaa |
30363602 |
T |
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| Q |
386 |
actaaaaatagaaat |
400 |
Q |
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||||||||||||||| |
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| T |
30363601 |
actaaaaatagaaat |
30363587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 31466772 - 31466885
Alignment:
| Q |
186 |
tcttcaaacattctatccgtaggtcttcttccggttaacatttctaaaactagaattccaaagctatacatgtctccttcaattgacaacatagaaccca |
285 |
Q |
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|||||||||||| ||| |||||||| ||| |||| | ||||||||||| ||||||||| |||||||||||||| ||||||| ||| | | ||||||||| |
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| T |
31466772 |
tcttcaaacatttcatctgtaggtctccttgcggtcagcatttctaaaattagaattccgaagctatacatgtcgccttcaactgaaagcttagaaccca |
31466871 |
T |
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| Q |
286 |
ttccatactctgaa |
299 |
Q |
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| T |
31466872 |
ttccatactctgaa |
31466885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 10551363 - 10551276
Alignment:
| Q |
213 |
cttccggttaacatttctaaaactagaattccaaagctatacatgtctccttcaattgacaacatagaacccattccatactctgaaa |
300 |
Q |
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| T |
10551363 |
cttccagttaacatttctaataacagaattccaaagctatacatgtcaccttcagttgacacctcaaaacccattccatactctgaaa |
10551276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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