View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5667_low_4 (Length: 277)
Name: NF5667_low_4
Description: NF5667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5667_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 23129792 - 23129531
Alignment:
| Q |
7 |
ggtaatactcgctttgaagccaaacactaccttaacgctgtcaagggtttacaatctgctatgcaatattttgtcacacatgattccacctccaacactc |
106 |
Q |
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| T |
23129792 |
ggtaatactcgctttgaagccaaacactaccttaacgctgtcaagggtttacaatctgctatgcaatattttgtcacacatgattccacctccaacactc |
23129693 |
T |
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| Q |
107 |
ttgttagagctcaatttttaatgcaacttgctatgaaaactcttcaaaaagagttttataacatactttcaacaaatagagaacatttagaccctgaatc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23129692 |
ttgttagagctcaatttttaatgcaacttgctatgaaaactcttcaaaaagagttttataacatactttcaacaaatagagaacatttagaccctgaatc |
23129593 |
T |
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| Q |
207 |
tgtttctaaccgttcgtccaccgatcgtcgaagcagtttctccgtttctgattatgatgatg |
268 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23129592 |
tgtttctaaccgttcctccaccgatcgtcgaagcagtttctccgtttctgattatgatgatg |
23129531 |
T |
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