View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5668-Insertion-1 (Length: 257)
Name: NF5668-Insertion-1
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 40749018 - 40749267
Alignment:
| Q |
8 |
agtcaaactttttccttt-gataattaacaaataaattagttttgctatatannnnnnn-cttccaaatgtgtactaaatttggattgaaatattacaga |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40749018 |
agtcaaactttttccttttgataattaacaaataaattggttttgctatatattttttttcttccaaatgtgtactaaatttggattgaaatattacaga |
40749117 |
T |
|
| Q |
106 |
tccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcggaat |
205 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40749118 |
tccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcagaat |
40749217 |
T |
|
| Q |
206 |
cttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40749218 |
cttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag |
40749267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 28496513 - 28496367
Alignment:
| Q |
100 |
tacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagat |
199 |
Q |
| |
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||||||||||||||| || ||||||||||| || || ||||| || ||||| || ||| ||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
28496513 |
tacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagat |
28496414 |
T |
|
| Q |
200 |
cggaatcttcagcttcatagaagaggtcacaacctaccatggaagct |
246 |
Q |
| |
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| || ||||| || ||||||||||| |||||||| ||||||||||| |
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|
| T |
28496413 |
caaaaccttcaactacatagaagaggacacaaccttccatggaagct |
28496367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 42286842 - 42286993
Alignment:
| Q |
103 |
agatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcgg |
202 |
Q |
| |
|
|||||||||||| ||||| || || || |||||||||||||||||||| || || |||| | || || | ||||| ||||| || ||||| || | |
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| T |
42286842 |
agatccagatgcagaagtgatagcactatctcccaagactctaatggcaacaaatagatttatatgtgaggtttgcaataaagggtttcaaagggagcaa |
42286941 |
T |
|
| Q |
203 |
aatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaa |
254 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || |||||||||||||||| |
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|
| T |
42286942 |
aatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaa |
42286993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 50789222 - 50789071
Alignment:
| Q |
101 |
acagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatc |
200 |
Q |
| |
|
|||||||||||||| || || || || || ||||||||||| |||||||| || ||| | || | || || ||||||||||||| ||||||||||| | |
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|
| T |
50789222 |
acagatccagatgcagaggtgatagcactatctcccaagaccctaatggcaacaaacaggtttatttgtgaggtatgcaacaaagggttccaaagagagc |
50789123 |
T |
|
| Q |
201 |
ggaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagca |
252 |
Q |
| |
|
||||| |||||||| |||||||| |||||| | || |||||||| ||||| |
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|
| T |
50789122 |
aaaatctacagcttcacagaagaggacacaacttgccttggaagcttaagca |
50789071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 12774660 - 12774813
Alignment:
| Q |
101 |
acagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatc |
200 |
Q |
| |
|
|||||||||||||| ||||| || || || |||||||||| |||||||| || ||| |||| || || ||| | ||| | ||||| |||||||| || | |
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|
| T |
12774660 |
acagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgccaaaaagggttccaaagggagc |
12774759 |
T |
|
| Q |
201 |
ggaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaa |
254 |
Q |
| |
|
||| | || || ||||||||||| ||||| | || |||||||||||||||| |
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|
| T |
12774760 |
aaaatttacaactacatagaagaggacacaatttgccttggaagctaaagcaaa |
12774813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 4160175 - 4160251
Alignment:
| Q |
179 |
aacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag |
255 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||||||| ||||| || || | ||||||||||||||| |||| |
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|
| T |
4160175 |
aacaaaggttttcaaagagatcaaaatcttcagcttcataagagaggacataatttgccatggaagctaaagaaaag |
4160251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 31644389 - 31644309
Alignment:
| Q |
176 |
tgcaacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaagg |
256 |
Q |
| |
|
|||||||| || || |||||||||| || || ||||| ||||| ||||| || ||||||||||||||| | ||||||||| |
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|
| T |
31644389 |
tgcaacaagggttttcaaagagatcaaaacctacagctacataggagaggacataacctaccatggaagttgaagcaaagg |
31644309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 36989105 - 36989217
Alignment:
| Q |
143 |
ctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatgga |
242 |
Q |
| |
|
|||||||| || ||| ||||||| || |||||||| ||||| || || |||||||| | |||||||| || || ||||||| |||||| | || |||| |
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|
| T |
36989105 |
ctaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgcaccgaagaggacacaacttgccttgga |
36989204 |
T |
|
| Q |
243 |
agctaaagcaaag |
255 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
36989205 |
agctaaaacaaag |
36989217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 22085867 - 22085758
Alignment:
| Q |
146 |
atggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaagc |
245 |
Q |
| |
|
||||| |||||||| ||| | || ||||| |||||||| || ||||||||||| | |||| | ||||||||| | |||| ||||||||||||||||||| |
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|
| T |
22085867 |
atggcgacgaaccgtttcttatgtgaaatctgcaacaagggtttccaaagagaccagaatttgcagcttcatcggcgaggacacaacctaccatggaagc |
22085768 |
T |
|
| Q |
246 |
taaagcaaag |
255 |
Q |
| |
|
| |||||||| |
|
|
| T |
22085767 |
tgaagcaaag |
22085758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 33186527 - 33186600
Alignment:
| Q |
170 |
gaaatatgcaacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaa |
243 |
Q |
| |
|
|||||||| |||||||| || |||||||||| ||||||||| || ||||||||||| || || ||||||||||| |
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|
| T |
33186527 |
gaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaa |
33186600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 5789051 - 5788983
Alignment:
| Q |
176 |
tgcaacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaag |
244 |
Q |
| |
|
||||||||||| || |||||||||| |||||||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
5789051 |
tgcaacaaagggtttcaaagagatcaaaatcttcaacttcacagaagaggtcataatttaccatggaag |
5788983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 42898099 - 42898175
Alignment:
| Q |
179 |
aacaaaggattccaaagagatcggaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaag |
255 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||| |||||| ||||| | ||||||||| | |||||||| |
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|
| T |
42898099 |
aacaaaggatttcaaagagatcagaatcttcaacttcataaaagaggacacaatttgccatggaagttgaagcaaag |
42898175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 52248760 - 52248669
Alignment:
| Q |
102 |
cagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaa |
193 |
Q |
| |
|
||||||||||||||||||| || ||| | || ||||| ||| || | || |||||||| ||| | ||||| || |||||||||||||||||| |
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|
| T |
52248760 |
cagatccagatgctgaagtaatcgctttatcacccaaaactttactagcaacgaaccgtttcatatgcgagatctgcaacaaaggattccaa |
52248669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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