View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668-Insertion-10 (Length: 412)
Name: NF5668-Insertion-10
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 78 - 412
Target Start/End: Original strand, 5972504 - 5972839
Alignment:
| Q |
78 |
gaaagtgtgttaaaagttccacattcaataagaaatgacctgaacaagtgagtacaagtctagccaatcctcatctcacaaattgtaatgtgatgttgca |
177 |
Q |
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| T |
5972504 |
gaaagtgtgttaaaagttccacattggataagaaatgacctgaacaagtgattaccagtcgaggcaatcctcatctcacaagttgttatgtgatgttgcg |
5972603 |
T |
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| Q |
178 |
ttacgtcaaaccacaaactctaagatttccttccaaataacccaaatacaagccatctagttcaattgaatgtaaaaacgaatccttttta-ggaacact |
276 |
Q |
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| T |
5972604 |
ttacgtcaaaccacaaactctaagatttccttccaaataacccaaatgcaagccatctagttcaattgaatgtaaaaacgaatcccttttagggaacact |
5972703 |
T |
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| Q |
277 |
cttaagttgccaaacatattaagttgatcaaaaagattcatcgaaagctctgagtgaatgtctagccattgcataacaagagacctaatactcccaaaaa |
376 |
Q |
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| T |
5972704 |
tttaagttaccaaacatattaagttgatcaaaaagattcatcggaagttctgagtgaatgtctaaccattgcagaacaagagaccaaatactcccaaaaa |
5972803 |
T |
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| Q |
377 |
tatagacaatccggaaaaagacggtcgaaactttcc |
412 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
5972804 |
aatagacaatccaaaaaaagacggtcgaaactttcc |
5972839 |
T |
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