View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668-Insertion-11 (Length: 396)
Name: NF5668-Insertion-11
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 49880094 - 49879705
Alignment:
| Q |
8 |
gaacttgtgtttttctcatgaagtaatcaacaacaagtatcccgccaaaacgagcagctacctctttactgttcatgacaagaggctcttccatttcatc |
107 |
Q |
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| T |
49880094 |
gaacttgtggttttcccatgaagtaatcaacaacaagtatcccgctaaaacgagcagctacctcattactattcatggcaagaggctcttccatttcatc |
49879995 |
T |
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| Q |
108 |
attgggaacttgaaccacccaacgtccttgtcttgcaggaaataccctgttgttcttggcccttcttggtgctccatacaacttctctatcagatcaaac |
207 |
Q |
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| T |
49879994 |
attgggaacttgaaccacccaacgtccttgtcttgcaggaaataccctgttgttcttggcccttcttggtgctccatacaacttctctatcagatcaaac |
49879895 |
T |
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| Q |
208 |
ccttccaaacctatctctctcaggtttgtttcagctgccattaattgatgttgatgttgaagttgagggaatagttattatgctttgtgtgtgttttctg |
307 |
Q |
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| T |
49879894 |
ccttccaaacctatctctctcaggtttgtttcaggtgccattaattgatgttgaagttgaagttgagggaatagttattatgctttgtgtgtgttttctg |
49879795 |
T |
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| Q |
308 |
gttgcttcaatagaatcatgtctcccccttatatagaaaggaaaaatggttctttgaacttcccctgcaactgc-atgcagcacctatgt |
396 |
Q |
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| T |
49879794 |
gttgcttcaatagaatcctgtctcccccttatatagaaaagaaaaatggttctttgaacttgccctgcaactgcaatgcagcacctatgt |
49879705 |
T |
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