View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5668-Insertion-12 (Length: 385)

Name: NF5668-Insertion-12
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5668-Insertion-12
NF5668-Insertion-12
[»] chr8 (32 HSPs)
chr8 (8-385)||(8697574-8697951)
chr8 (8-385)||(10646592-10646969)
chr8 (8-385)||(45278377-45278754)
chr8 (102-385)||(41307731-41308014)
chr8 (8-385)||(40486134-40486506)
chr8 (332-385)||(27034997-27035050)
chr8 (332-385)||(3585451-3585504)
chr8 (332-385)||(40918953-40919006)
chr8 (332-385)||(43275621-43275674)
chr8 (332-385)||(2540155-2540208)
chr8 (332-385)||(7146913-7146966)
chr8 (332-385)||(11174447-11174500)
chr8 (332-385)||(11646549-11646602)
chr8 (332-385)||(40058527-40058580)
chr8 (332-385)||(37345571-37345624)
chr8 (333-385)||(36068080-36068132)
chr8 (332-378)||(30999745-30999791)
chr8 (344-385)||(41305762-41305803)
chr8 (341-385)||(20546520-20546564)
chr8 (344-385)||(28562421-28562462)
chr8 (344-385)||(28567919-28567960)
chr8 (344-385)||(28575512-28575553)
chr8 (344-385)||(45278013-45278053)
chr8 (357-385)||(132017-132045)
chr8 (357-385)||(616783-616811)
chr8 (357-385)||(617017-617045)
chr8 (357-385)||(623176-623204)
chr8 (357-385)||(623410-623438)
chr8 (353-385)||(5878317-5878349)
chr8 (357-385)||(14237514-14237542)
chr8 (357-385)||(40494618-40494646)
chr8 (357-385)||(42587482-42587510)
[»] chr7 (25 HSPs)
chr7 (64-385)||(25059865-25060186)
chr7 (64-385)||(2911280-2911601)
chr7 (332-385)||(10981508-10981561)
chr7 (332-385)||(27813811-27813864)
chr7 (332-383)||(36453348-36453399)
chr7 (332-385)||(40348960-40349013)
chr7 (332-385)||(47110451-47110504)
chr7 (333-385)||(25614576-25614628)
chr7 (344-379)||(25059456-25059491)
chr7 (344-385)||(2910859-2910900)
chr7 (357-385)||(16778505-16778533)
chr7 (357-385)||(20885103-20885131)
chr7 (357-385)||(25566548-25566576)
chr7 (357-385)||(28061515-28061543)
chr7 (357-385)||(28061749-28061777)
chr7 (357-385)||(36623308-36623336)
chr7 (357-385)||(36623542-36623570)
chr7 (357-385)||(38852081-38852109)
chr7 (357-385)||(41897988-41898016)
chr7 (357-385)||(41898222-41898250)
chr7 (357-385)||(42877386-42877414)
chr7 (357-385)||(46103370-46103398)
chr7 (357-385)||(46103597-46103625)
chr7 (357-385)||(47156027-47156055)
chr7 (357-385)||(47156261-47156289)
[»] chr1 (30 HSPs)
chr1 (8-385)||(3943060-3943437)
chr1 (64-385)||(9588670-9588991)
chr1 (64-385)||(13984724-13985044)
chr1 (187-385)||(41959078-41959276)
chr1 (171-385)||(44228068-44228281)
chr1 (245-377)||(1168369-1168499)
chr1 (332-385)||(284333-284386)
chr1 (332-385)||(23045503-23045556)
chr1 (332-384)||(27211188-27211240)
chr1 (332-378)||(46771644-46771690)
chr1 (332-385)||(321626-321679)
chr1 (332-385)||(24772129-24772182)
chr1 (332-385)||(40783881-40783934)
chr1 (344-385)||(44227848-44227889)
chr1 (343-385)||(47038085-47038127)
chr1 (344-385)||(3943763-3943804)
chr1 (332-385)||(23526240-23526293)
chr1 (145-182)||(41959262-41959299)
chr1 (344-385)||(41959809-41959850)
chr1 (344-385)||(9589631-9589672)
chr1 (357-385)||(6402644-6402672)
chr1 (353-385)||(10845481-10845513)
chr1 (357-385)||(11641067-11641095)
chr1 (357-385)||(16120674-16120702)
chr1 (357-385)||(30701718-30701746)
chr1 (357-385)||(36399332-36399360)
chr1 (357-385)||(36757486-36757514)
chr1 (357-385)||(40771772-40771800)
chr1 (357-385)||(40772006-40772034)
chr1 (357-385)||(52024260-52024288)
[»] chr3 (35 HSPs)
chr3 (64-385)||(44277187-44277508)
chr3 (64-385)||(12094582-12094903)
chr3 (64-385)||(40931622-40931941)
chr3 (190-385)||(19911509-19911704)
chr3 (192-385)||(38805245-38805444)
chr3 (77-240)||(19911693-19911856)
chr3 (232-376)||(4226716-4226856)
chr3 (232-385)||(4235751-4235900)
chr3 (332-385)||(29375138-29375191)
chr3 (332-385)||(27707388-27707441)
chr3 (332-385)||(36881282-36881335)
chr3 (332-385)||(198855-198908)
chr3 (332-385)||(3383076-3383129)
chr3 (332-385)||(13364843-13364896)
chr3 (332-385)||(19241892-19241945)
chr3 (332-385)||(43750137-43750190)
chr3 (332-378)||(32835180-32835226)
chr3 (332-385)||(46694334-46694387)
chr3 (344-385)||(19912174-19912215)
chr3 (344-385)||(38806341-38806382)
chr3 (342-385)||(48963156-48963199)
chr3 (344-385)||(12095423-12095464)
chr3 (332-385)||(13702769-13702822)
chr3 (332-385)||(23088155-23088208)
chr3 (344-385)||(44276775-44276816)
chr3 (344-385)||(37293437-37293478)
chr3 (357-385)||(6910568-6910596)
chr3 (357-385)||(13499569-13499597)
chr3 (357-385)||(19823900-19823928)
chr3 (357-385)||(20765430-20765458)
chr3 (357-385)||(27010474-27010502)
chr3 (357-385)||(27010708-27010736)
chr3 (357-385)||(42490430-42490458)
chr3 (357-385)||(42761483-42761511)
chr3 (357-385)||(42761717-42761745)
[»] chr2 (18 HSPs)
chr2 (208-385)||(34224254-34224431)
chr2 (332-385)||(1102503-1102556)
chr2 (332-385)||(3518908-3518961)
chr2 (332-385)||(12969963-12970016)
chr2 (332-384)||(23366790-23366842)
chr2 (332-385)||(37673961-37674014)
chr2 (332-385)||(39938170-39938223)
chr2 (347-385)||(12969740-12969778)
chr2 (347-385)||(40756911-40756949)
chr2 (357-385)||(2183191-2183219)
chr2 (357-385)||(5405230-5405258)
chr2 (357-385)||(7608283-7608311)
chr2 (357-385)||(8042256-8042284)
chr2 (357-385)||(11841593-11841621)
chr2 (357-385)||(19141066-19141094)
chr2 (357-385)||(19141300-19141328)
chr2 (357-385)||(39358146-39358174)
chr2 (357-385)||(44365391-44365419)
[»] scaffold0257 (2 HSPs)
scaffold0257 (211-385)||(23467-23641)
scaffold0257 (344-385)||(23872-23913)
[»] chr6 (28 HSPs)
chr6 (211-385)||(19996594-19996768)
chr6 (332-385)||(1605579-1605632)
chr6 (332-385)||(7761301-7761354)
chr6 (332-385)||(29260192-29260245)
chr6 (332-385)||(8626482-8626535)
chr6 (332-385)||(15064918-15064971)
chr6 (332-385)||(17942443-17942496)
chr6 (333-385)||(4129435-4129487)
chr6 (332-378)||(30734707-30734753)
chr6 (332-385)||(13757208-13757261)
chr6 (336-379)||(30734836-30734879)
chr6 (344-385)||(19996322-19996363)
chr6 (332-385)||(8235624-8235677)
chr6 (333-370)||(31559961-31559998)
chr6 (347-385)||(15064695-15064733)
chr6 (347-385)||(17942682-17942720)
chr6 (357-385)||(4147931-4147959)
chr6 (357-385)||(18668688-18668716)
chr6 (357-385)||(18668922-18668950)
chr6 (357-385)||(19087958-19087986)
chr6 (357-385)||(19088192-19088220)
chr6 (357-385)||(20437017-20437045)
chr6 (357-385)||(22055006-22055034)
chr6 (357-385)||(24623941-24623969)
chr6 (357-385)||(25476042-25476070)
chr6 (357-385)||(32414913-32414941)
chr6 (357-385)||(32420754-32420782)
chr6 (357-385)||(32671816-32671844)
[»] chr5 (19 HSPs)
chr5 (211-385)||(15305094-15305265)
chr5 (332-385)||(12807077-12807130)
chr5 (332-385)||(16983258-16983311)
chr5 (332-385)||(25773649-25773702)
chr5 (332-385)||(30720716-30720769)
chr5 (332-385)||(37900848-37900901)
chr5 (171-253)||(31485620-31485702)
chr5 (332-385)||(10285281-10285334)
chr5 (332-385)||(40886834-40886887)
chr5 (332-385)||(36561323-36561376)
chr5 (333-374)||(7277647-7277688)
chr5 (344-385)||(15304822-15304863)
chr5 (347-385)||(25683229-25683267)
chr5 (357-385)||(978077-978105)
chr5 (357-385)||(978311-978339)
chr5 (357-385)||(8086264-8086292)
chr5 (357-385)||(9502627-9502655)
chr5 (357-385)||(14634157-14634185)
chr5 (357-385)||(33387453-33387481)
[»] chr4 (31 HSPs)
chr4 (215-370)||(19361662-19361817)
chr4 (207-354)||(20541492-20541643)
chr4 (333-385)||(40122710-40122762)
chr4 (332-385)||(14261044-14261097)
chr4 (332-385)||(21310425-21310478)
chr4 (332-385)||(21661759-21661812)
chr4 (332-385)||(21670523-21670576)
chr4 (332-385)||(25704651-25704704)
chr4 (332-385)||(34324807-34324860)
chr4 (333-385)||(12071561-12071613)
chr4 (332-385)||(22321491-22321544)
chr4 (332-385)||(24706471-24706524)
chr4 (333-385)||(44568837-44568889)
chr4 (332-385)||(20249236-20249289)
chr4 (332-383)||(31892240-31892291)
chr4 (344-378)||(19362189-19362223)
chr4 (357-385)||(2760730-2760758)
chr4 (357-385)||(2760961-2760989)
chr4 (357-385)||(4467520-4467548)
chr4 (357-385)||(19433358-19433386)
chr4 (357-385)||(26169986-26170014)
chr4 (357-385)||(26170221-26170249)
chr4 (357-385)||(29830343-29830371)
chr4 (357-385)||(35381128-35381156)
chr4 (357-385)||(38416650-38416678)
chr4 (357-385)||(38416884-38416912)
chr4 (357-385)||(44232077-44232105)
chr4 (357-385)||(45292066-45292094)
chr4 (357-385)||(47386520-47386548)
chr4 (357-385)||(55209574-55209602)
chr4 (357-385)||(55209808-55209836)
[»] scaffold1431 (1 HSPs)
scaffold1431 (332-385)||(123-176)
[»] scaffold1770 (1 HSPs)
scaffold1770 (333-385)||(170-222)
[»] scaffold0054 (1 HSPs)
scaffold0054 (332-385)||(45454-45507)
[»] scaffold0022 (1 HSPs)
scaffold0022 (357-385)||(100647-100675)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 8697574 - 8697951
Alignment:
Q  8 ttaagattagagtataaaccg-ggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 106  Q
    ||||||||||||||||||    |||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  8697574 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 8697672  T
Q  107 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8697673 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatatattggtattgaagga 8697772  T
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697773 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 8697872  T
Q  307 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697873 aacttttgtgtcaaactagtttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 8697951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 10646969 - 10646592
Alignment:
Q  8 ttaagattagagtataaaccg-ggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 106  Q
    ||||||||||||||||||    |||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  10646969 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 10646871  T
Q  107 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646870 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 10646771  T
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646770 tgattcaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 10646671  T
Q  307 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10646670 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagta 10646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 45278377 - 45278754
Alignment:
Q  8 ttaagattagagtataaaccg-ggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 106  Q
    ||||||||||||||||||    |||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        || ||    
T  45278377 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattata 45278475  T
Q  107 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45278476 ttggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccaatatgtattggtattgaagga 45278575  T
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278576 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 45278675  T
Q  307 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278676 aacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 102 - 385
Target Start/End: Original strand, 41307731 - 41308014
Alignment:
Q  102 ttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41307731 ttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattggtattg 41307830  T
Q  202 aaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtata 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41307831 aaggatgattgaatttaattaattttgatattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtata 41307930  T
Q  302 ataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41307931 ataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 41308014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 40486134 - 40486506
Alignment:
Q  8 ttaagattagagtataaaccg-ggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 106  Q
    ||||||||||||||||||    |||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        |||||    
T  40486134 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattgta 40486232  T
Q  107 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 206  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486233 ttggcatgctattttcaatacataa-----gcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 40486327  T
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40486328 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 40486427  T
Q  307 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40486428 aacttttgtgtcaaattagcttgtccttggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 27035050 - 27034997
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27035050 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 3585504 - 3585451
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3585504 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 40918953 - 40919006
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40918953 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 40919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 43275621 - 43275674
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43275621 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 2540155 - 2540208
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2540155 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaggaagta 2540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 7146966 - 7146913
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  7146966 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 11174447 - 11174500
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  11174447 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 11646549 - 11646602
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  11646549 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgaagggagta 11646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 40058527 - 40058580
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  40058527 cttggttagtgcaatttctccgaaatggacatgtattttgaaacggagggagta 40058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 37345624 - 37345571
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  37345624 cttggttggtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 36068132 - 36068080
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||||||||||    
T  36068132 ttggttagtacaattcctccaaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 30999745 - 30999791
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 378  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30999745 cttggttagtgcaatttctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 41305803 - 41305762
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 20546520 - 20546564
Alignment:
Q  341 tgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||    
T  20546520 tgcaatttcttcaaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 28562462 - 28562421
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28562462 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28562421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 28567960 - 28567919
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28567960 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28567919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 28575553 - 28575512
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  28575553 aatttcttcaaaatggacaagtattttgaaacggaggaagta 28575512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 45278053 - 45278013
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  45278053 aatttctctaaaatggacatgtattttgaaac-gagggagta 45278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 132045 - 132017
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  132045 tggacatgtattttgaaacggagggagta 132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 616811 - 616783
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  616811 tggacatgtattttgaaacggagggagta 616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 617017 - 617045
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  617017 tggacatgtattttgaaacggagggagta 617045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 623204 - 623176
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  623204 tggacatgtattttgaaacggagggagta 623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 623410 - 623438
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  623410 tggacatgtattttgaaacggagggagta 623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 5878349 - 5878317
Alignment:
Q  353 aaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||||    
T  5878349 aaaatggacatgtatttggaaacggagggagta 5878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 14237514 - 14237542
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  14237514 tggacatgtattttgaaacggagggagta 14237542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 40494618 - 40494646
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  40494618 tggacatgtattttgaaacggagggagta 40494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 42587482 - 42587510
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  42587482 tggacatgtattttgaaacggagggagta 42587510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 64 - 385
Target Start/End: Original strand, 25059865 - 25060186
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25059865 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 25059964  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25059965 accatatgtattggtattgtcagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgagagtaattatgagatggggtaa 25060064  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25060065 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 25060164  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||    
T  25060165 gtattttgaaacggagggagta 25060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 64 - 385
Target Start/End: Original strand, 2911280 - 2911601
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911280 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 2911379  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911380 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 2911479  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2911480 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacat 2911579  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||| ||||||||||    
T  2911580 gtattttgaaatggagggagta 2911601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 10981561 - 10981508
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10981561 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 10981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 27813864 - 27813811
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27813864 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 27813811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 36453348 - 36453399
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggag 383  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36453348 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 40349013 - 40348960
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40349013 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 47110504 - 47110451
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  47110504 cttggttagtgcaatttctccaaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 25614576 - 25614628
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  25614576 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 25059491 - 25059456
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggag 379  Q
    |||||||| |||||||||||||||||||||||||||    
T  25059491 aatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 2910900 - 2910859
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagta 2910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 16778533 - 16778505
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  16778533 tggacatgtattttgaaacggagggagta 16778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 20885131 - 20885103
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  20885131 tggacatgtattttgaaacggagggagta 20885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 25566576 - 25566548
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  25566576 tggacatgtattttgaaacggagggagta 25566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 28061543 - 28061515
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  28061543 tggacatgtattttgaaacggagggagta 28061515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 28061749 - 28061777
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  28061749 tggacatgtattttgaaacggagggagta 28061777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 36623336 - 36623308
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  36623336 tggacatgtattttgaaacggagggagta 36623308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 36623542 - 36623570
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  36623542 tggacatgtattttgaaacggagggagta 36623570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 38852081 - 38852109
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  38852081 tggacatgtattttgaaacggagggagta 38852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 41898016 - 41897988
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  41898016 tggacatgtattttgaaacggagggagta 41897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 41898222 - 41898250
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  41898222 tggacatgtattttgaaacggagggagta 41898250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 42877414 - 42877386
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  42877414 tggacatgtattttgaaacggagggagta 42877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 46103398 - 46103370
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  46103398 tggacatgtattttgaaacggagggagta 46103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 46103597 - 46103625
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  46103597 tggacatgtattttgaaacggagggagta 46103625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 47156055 - 47156027
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  47156055 tggacatgtattttgaaacggagggagta 47156027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 47156261 - 47156289
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  47156261 tggacatgtattttgaaacggagggagta 47156289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 3943437 - 3943060
Alignment:
Q  8 ttaagattagagtataaaccg-ggagggaagtttttcaattgagtttnnnnnnnnnnttgataaccgaaacatgataagagaagttgnnnnnnnnttgta 106  Q
    ||||||||||||||||||    |||||||||||||||||||||||||          |||||||||||| |||||||||||||||||        || ||    
T  3943437 ttaagattagagtataaattttggagggaagtttttcaattgagtttaaaaaaaaa-ttgataaccgaagcatgataagagaagttgaaaaaaaattata 3943339  T
Q  107 ttggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943338 ttggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaagga 3943239  T
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943238 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagg 3943139  T
Q  307 aacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943138 aacttttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 3943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 64 - 385
Target Start/End: Complemental strand, 9588991 - 9588670
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9588991 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtattggcatgctattttcaatatataaccgcagcaaaaacaatgtgatttactagatga 9588892  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9588891 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 9588792  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9588791 ataaatgtaaaatggagaaaatcaaagacaagggtataataggaacttttgtgtcaaaatagattgtccttggttactgcaatttctccaaaatggacat 9588692  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||    
T  9588691 gtattttgaaacggagggagta 9588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 64 - 385
Target Start/End: Original strand, 13984724 - 13985044
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  13984724 ttgataaccgaagcatgataagagaagttgaaaaaaa-ttgtattggcatgctattttcaatacataaccacaacaaaaacaatgtgatttactagatga 13984822  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984823 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 13984922  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984923 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 13985022  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||||||| ||||||    
T  13985023 gtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 187 - 385
Target Start/End: Complemental strand, 41959276 - 41959078
Alignment:
Q  187 tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959276 tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc 41959177  T
Q  287 aaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41959176 aaagacaagggtataatatgaacttttgtgtcaaactagcttgtccttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 171 - 385
Target Start/End: Original strand, 44228068 - 44228281
Alignment:
Q  171 gtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatg 270  Q
    |||| ||||||||| ||||||||||||||||     ||||||| ||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  44228068 gtatcggtattgccggtatgtattggtattgccatttgattgactttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatg 44228167  T
Q  271 taaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 370  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44228168 taaaatgaaggaaataaaaaacaagggtataataggaacttttatgtc-agctagcttgtccttggttacagcaatttctccaaaatggacatgtatttt 44228266  T
Q  371 gaaacggagggagta 385  Q
    |||| ||||| ||||    
T  44228267 gaaatggaggtagta 44228281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 245 - 377
Target Start/End: Complemental strand, 1168499 - 1168369
Alignment:
Q  245 taattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgca 344  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||    
T  1168499 taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtccttggttactgca 1168402  T
Q  345 atttctccaaaatggacatgtattttgaaacgg 377  Q
    |||||| |||||  |||||||||||||||||||    
T  1168401 atttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 284386 - 284333
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  284386 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 23045503 - 23045556
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23045503 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 27211188 - 27211240
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagt 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27211188 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 46771690 - 46771644
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46771690 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 321679 - 321626
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  321679 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 24772129 - 24772182
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  24772129 cttggttagtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 40783881 - 40783934
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  40783881 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 40783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 44227889 - 44227848
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagta 44227848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 47038085 - 47038127
Alignment:
Q  343 caatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  47038085 caatttctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 23526293 - 23526240
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  23526293 cttgattactgcaatttctccaaaatgaacatgtattttgaaatggaaggagta 23526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 41959299 - 41959262
Alignment:
Q  145 aatgtgatttactagatgaaccatatgtattggtattg 182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41959299 aatgtgatttactagatgaaccatatgtattggtattg 41959262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 41959809 - 41959850
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 9589631 - 9589672
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 6402644 - 6402672
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  6402644 tggacatgtattttgaaacggagggagta 6402672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 10845513 - 10845481
Alignment:
Q  353 aaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||| |||||    
T  10845513 aaaatggacatgtattttgaaacggagtgagta 10845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 11641095 - 11641067
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  11641095 tggacatgtattttgaaacggagggagta 11641067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 16120674 - 16120702
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  16120674 tggacatgtattttgaaacggagggagta 16120702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 30701746 - 30701718
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  30701746 tggacatgtattttgaaacggagggagta 30701718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 36399332 - 36399360
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  36399332 tggacatgtattttgaaacggagggagta 36399360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 36757514 - 36757486
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  36757514 tggacatgtattttgaaacggagggagta 36757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 40771800 - 40771772
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  40771800 tggacatgtattttgaaacggagggagta 40771772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 40772006 - 40772034
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  40772006 tggacatgtattttgaaacggagggagta 40772034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 52024260 - 52024288
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  52024260 tggacatgtattttgaaacggagggagta 52024288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 64 - 385
Target Start/End: Original strand, 44277187 - 44277508
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44277187 ttgataaccgaagcatgataagagaagttgaaaaaaaattatattggcatgctattttcaatacataaccgcagcaaaaaccatgtgatttactagatga 44277286  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44277287 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 44277386  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44277387 ataaatgtaaaatggagaaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacat 44277486  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||    
T  44277487 gtattttgaaacggagggagta 44277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 64 - 385
Target Start/End: Complemental strand, 12094903 - 12094582
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| ||||| |||||||||||        |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  12094903 ttgataaccgaagcatgacaagagaagttgaaaaaaaattgtattggcatgctattttcaatacataaccgcaataaaaacaatgtgatttactagatga 12094804  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094803 accatatgtattggtattgtcggtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 12094704  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094703 ataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 12094604  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||    
T  12094603 gtattttgaaacggagggagta 12094582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 64 - 385
Target Start/End: Complemental strand, 40931941 - 40931622
Alignment:
Q  64 ttgataaccgaaacatgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatga 163  Q
    |||||||||||| |||||||||||||||||        ||||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  40931941 ttgataaccgaagcatgataagagaagttgaaaaaaaattgtgatggcatgctatttttaatacataaccgcagcaaaaacaat-tgatttactagatga 40931843  T
Q  164 accatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaa 263  Q
    ||| ||||||||||||||| || ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40931842 accgtatgtattggtattgtcactatgtatcggtattgaaggat-attgactttaattaattttggtattggtattgggagtaactatgagatggggtaa 40931744  T
Q  264 ataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacat 363  Q
    |||||  ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||| || ||||| |  ||||| |||||    
T  40931743 ataaacataaaatggaggaaatcaaagacaagagtataataggaacttttgtgttaatctagcttgtgcttggttaatgtaatttttttaaaatagacat 40931644  T
Q  364 gtattttgaaacggagggagta 385  Q
    ||||||| ||||||| ||||||    
T  40931643 gtattttaaaacggatggagta 40931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 190 - 385
Target Start/End: Complemental strand, 19911704 - 19911509
Alignment:
Q  190 gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19911704 gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaa 19911605  T
Q  290 gacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19911604 gacaagggtataataggaacttttgtgtcaaactaacttgtccttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagta 19911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 192 - 385
Target Start/End: Complemental strand, 38805444 - 38805245
Alignment:
Q  192 attggtattgaaggatgattgaatttaattaattttggtattggtattgg------gagtaattatgagatggggtaaataaatgtaaaatggaggaaat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  38805444 attggtattgaaggatgattgaatttaattaattttggtattggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaat 38805345  T
Q  286 caaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38805344 caaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 19911856 - 19911693
Alignment:
Q  77 catgataagagaagttgnnnnnnnnttgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattg 176  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19911856 catgataagagaagttgaaaaaaaattgtattggcatgctattttcaatacataaccgaagcaaaaacaatgtgatttaatagatgaaccatatgtattg 19911757  T
Q  177 gtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19911756 gtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattg 19911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 232 - 376
Target Start/End: Complemental strand, 4226856 - 4226716
Alignment:
Q  232 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 331  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  4226856 ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtgtcaaactagtttgtc 4226760  T
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacg 376  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaacg 4226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 4235900 - 4235751
Alignment:
Q  232 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 331  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  4235900 ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtatcaaactagcttgtc 4235804  T
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||  |||||||||||||||||| || |||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaacgaagtgagta 4235751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 29375191 - 29375138
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29375191 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 29375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 27707388 - 27707441
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27707388 cttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 36881335 - 36881282
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36881335 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 198908 - 198855
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  198908 cttggtcagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 3383129 - 3383076
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  3383129 cttggttactgcaatttctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 13364896 - 13364843
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  13364896 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 13364843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 19241892 - 19241945
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19241892 cttggttagtgcaatttcaccaaaatggacatgtattttgaaacggagggagta 19241945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 43750190 - 43750137
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  43750190 cttggttactccaatttctccaaaatggacatgtattttgaaacgaagggagta 43750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 32835180 - 32835226
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 378  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32835180 cttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 46694334 - 46694387
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  46694334 cttgattagtgcaatttctccaaaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 19912174 - 19912215
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 38806341 - 38806382
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 48963199 - 48963156
Alignment:
Q  342 gcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  48963199 gcaatttctccaaaatagatatgtattttgaaacggagggagta 48963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 13702822 - 13702769
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||| | |||||||||| ||| ||| ||||||    
T  13702822 cttggttactgcaatttctccaaaataggcatgtattttaaaatggatggagta 13702769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 23088155 - 23088208
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||| |||||||||    
T  23088155 cttggttagtgcaatttcttcaaaatagacatatattttgaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 37293478 - 37293437
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  37293478 aatttcttcaaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 6910568 - 6910596
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  6910568 tggacatgtattttgaaacggagggagta 6910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 13499569 - 13499597
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  13499569 tggacatgtattttgaaacggagggagta 13499597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 19823928 - 19823900
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19823928 tggacatgtattttgaaacggagggagta 19823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 20765430 - 20765458
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  20765430 tggacatgtattttgaaacggagggagta 20765458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 27010502 - 27010474
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  27010502 tggacatgtattttgaaacggagggagta 27010474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 27010708 - 27010736
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  27010708 tggacatgtattttgaaacggagggagta 27010736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 42490430 - 42490458
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  42490430 tggacatgtattttgaaacggagggagta 42490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 42761511 - 42761483
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  42761511 tggacatgtattttgaaacggagggagta 42761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 42761717 - 42761745
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  42761717 tggacatgtattttgaaacggagggagta 42761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 208 - 385
Target Start/End: Original strand, 34224254 - 34224431
Alignment:
Q  208 gattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224254 gattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatagga 34224353  T
Q  308 acttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224354 acttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 1102556 - 1102503
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102556 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 3518961 - 3518908
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3518961 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 12969963 - 12970016
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12969963 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 23366842 - 23366790
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagt 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23366842 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 37673961 - 37674014
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  37673961 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 39938223 - 39938170
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  39938223 cttggttagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 12969778 - 12969740
Alignment:
Q  347 ttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12969778 ttctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 40756949 - 40756911
Alignment:
Q  347 ttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40756949 ttctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 2183191 - 2183219
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  2183191 tggacatgtattttgaaacggagggagta 2183219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 5405230 - 5405258
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  5405230 tggacatgtattttgaaacggagggagta 5405258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 7608283 - 7608311
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  7608283 tggacatgtattttgaaacggagggagta 7608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 8042256 - 8042284
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  8042256 tggacatgtattttgaaacggagggagta 8042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 11841621 - 11841593
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  11841621 tggacatgtattttgaaacggagggagta 11841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 19141094 - 19141066
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19141094 tggacatgtattttgaaacggagggagta 19141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 19141300 - 19141328
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19141300 tggacatgtattttgaaacggagggagta 19141328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 39358174 - 39358146
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  39358174 tggacatgtattttgaaacggagggagta 39358146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 44365391 - 44365419
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  44365391 tggacatgtattttgaaacggagggagta 44365419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 211 - 385
Target Start/End: Complemental strand, 23641 - 23467
Alignment:
Q  211 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23641 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 23542  T
Q  311 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23541 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 23872 - 23913
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 385
Target Start/End: Original strand, 19996594 - 19996768
Alignment:
Q  211 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19996594 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaaggtataataggaact 19996693  T
Q  311 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19996694 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 19996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 1605632 - 1605579
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1605632 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 1605579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 7761354 - 7761301
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7761354 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 7761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 29260245 - 29260192
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29260245 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 29260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 8626535 - 8626482
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8626535 cttggttaatgcaatttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 15064918 - 15064971
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  15064918 cttggttgctgcaatttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 17942496 - 17942443
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17942496 cttggttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagta 17942443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 4129487 - 4129435
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  4129487 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 30734707 - 30734753
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 378  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  30734707 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 13757261 - 13757208
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  13757261 cttggttagtgtaatttctccaaaatggacatgtattttgaaacggagagagta 13757208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 30734836 - 30734879
Alignment:
Q  336 gttactgcaatttctccaaaatggacatgtattttgaaacggag 379  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  30734836 gttactgcaatttcttcaaaatggacatgtattttgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 19996363 - 19996322
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 8235677 - 8235624
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||  |||||||||    
T  8235677 cttggttactgcaatttcttcaaaatgtacatgtattttaaaatagagggagta 8235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 31559961 - 31559998
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtatttt 370  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31559961 ttggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 15064733 - 15064695
Alignment:
Q  347 ttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064733 ttctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 385
Target Start/End: Original strand, 17942682 - 17942720
Alignment:
Q  347 ttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  17942682 ttctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 4147959 - 4147931
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  4147959 tggacatgtattttgaaacggagggagta 4147931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 18668716 - 18668688
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  18668716 tggacatgtattttgaaacggagggagta 18668688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 18668922 - 18668950
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  18668922 tggacatgtattttgaaacggagggagta 18668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 19087986 - 19087958
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19087986 tggacatgtattttgaaacggagggagta 19087958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 19088192 - 19088220
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19088192 tggacatgtattttgaaacggagggagta 19088220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 20437045 - 20437017
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  20437045 tggacatgtattttgaaacggagggagta 20437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 22055006 - 22055034
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  22055006 tggacatgtattttgaaacggagggagta 22055034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 24623969 - 24623941
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  24623969 tggacatgtattttgaaacggagggagta 24623941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 25476042 - 25476070
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  25476042 tggacatgtattttgaaacggagggagta 25476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 32414913 - 32414941
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  32414913 tggacatgtattttgaaacggagggagta 32414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 32420754 - 32420782
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  32420754 tggacatgtattttgaaacggagggagta 32420782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 32671844 - 32671816
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  32671844 tggacatgtattttgaaacggagggagta 32671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 211 - 385
Target Start/End: Original strand, 15305094 - 15305265
Alignment:
Q  211 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15305094 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggatgaaatcaaagacaagggtataataggaact 15305193  T
Q  311 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305194 tttgtgtcaaacttgcttgtc---agttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 12807077 - 12807130
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12807077 cttggttaatgcaatttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 16983311 - 16983258
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16983311 cttggttactgcaatttctccaaaatggacatgtattttgaaacagagggagta 16983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 25773702 - 25773649
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25773702 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 30720716 - 30720769
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30720716 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 37900848 - 37900901
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  37900848 cttggttactgcaatttctccaaaatggatgtgtattttgaaacggagggagta 37900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 31485702 - 31485620
Alignment:
Q  171 gtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatga 253  Q
    ||||||||||| || ||||||||||||||||     ||||||| ||||||||||||||||||||||||| | |||||||||||    
T  31485702 gtattggtattaccggtatgtattggtattgccatttgattgactttaattaattttggtattggtattcgaagtaattatga 31485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 10285281 - 10285334
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  10285281 cttggttaatgcaatttctccaaaatagacatctattttgaaacggagggagta 10285334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 40886834 - 40886887
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  40886834 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 36561323 - 36561376
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||| |||||||||||| || |||||||||||||||||||||||||| ||||||    
T  36561323 cttgattactgcaatttttctaaaatggacatgtattttgaaacggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 7277647 - 7277688
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaa 374  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  7277647 ttggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 15304863 - 15304822
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 25683267 - 25683229
Alignment:
Q  347 ttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  25683267 ttctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 978105 - 978077
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  978105 tggacatgtattttgaaacggagggagta 978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 978311 - 978339
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  978311 tggacatgtattttgaaacggagggagta 978339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 8086264 - 8086292
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  8086264 tggacatgtattttgaaacggagggagta 8086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 9502655 - 9502627
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  9502655 tggacatgtattttgaaacggagggagta 9502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 14634185 - 14634157
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  14634185 tggacatgtattttgaaacggagggagta 14634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 33387453 - 33387481
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  33387453 tggacatgtattttgaaacggagggagta 33387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 215 - 370
Target Start/End: Complemental strand, 19361817 - 19361662
Alignment:
Q  215 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttg 314  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19361817 tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg 19361718  T
Q  315 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19361717 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 354
Target Start/End: Complemental strand, 20541643 - 20541492
Alignment:
Q  207 tgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagac----aagggtataa 302  Q
    ||||||| |||||||| ||||| |||||||||  ||||||||||||||||| |||||||||||||||||  |||||||||||||||    ||||||||||    
T  20541643 tgattgactttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataa 20541544  T
Q  303 taggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaa 354  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  20541543 taggaacttttgtgtcgaactagtttgtccttggttaatgcaatttctccaa 20541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 40122710 - 40122762
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122710 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 14261097 - 14261044
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14261097 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 14261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 21310478 - 21310425
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21310478 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 21310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 21661759 - 21661812
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21661759 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21661812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 21670523 - 21670576
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21670523 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 25704704 - 25704651
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25704704 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 34324807 - 34324860
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34324807 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 12071613 - 12071561
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12071613 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 22321491 - 22321544
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  22321491 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 24706471 - 24706524
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  24706471 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggatggagta 24706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 44568889 - 44568837
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  44568889 ttggttagtgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 20249236 - 20249289
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||| |||||    
T  20249236 cttggttaatacaatttatccaaaatggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 31892291 - 31892240
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggag 383  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||||||||    
T  31892291 cttggttactgcaatttctttaaaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 19362189 - 19362223
Alignment:
Q  344 aatttctccaaaatggacatgtattttgaaacgga 378  Q
    |||||||| ||||||||||||||||||||||||||    
T  19362189 aatttctctaaaatggacatgtattttgaaacgga 19362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 2760758 - 2760730
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  2760758 tggacatgtattttgaaacggagggagta 2760730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 2760961 - 2760989
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  2760961 tggacatgtattttgaaacggagggagta 2760989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 4467548 - 4467520
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  4467548 tggacatgtattttgaaacggagggagta 4467520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 19433386 - 19433358
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  19433386 tggacatgtattttgaaacggagggagta 19433358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 26170014 - 26169986
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  26170014 tggacatgtattttgaaacggagggagta 26169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 26170221 - 26170249
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  26170221 tggacatgtattttgaaacggagggagta 26170249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 29830371 - 29830343
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  29830371 tggacatgtattttgaaacggagggagta 29830343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 35381128 - 35381156
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  35381128 tggacatgtattttgaaacggagggagta 35381156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 38416678 - 38416650
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  38416678 tggacatgtattttgaaacggagggagta 38416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 38416884 - 38416912
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  38416884 tggacatgtattttgaaacggagggagta 38416912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 44232105 - 44232077
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  44232105 tggacatgtattttgaaacggagggagta 44232077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 45292066 - 45292094
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  45292066 tggacatgtattttgaaacggagggagta 45292094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 47386520 - 47386548
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  47386520 tggacatgtattttgaaacggagggagta 47386548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 55209602 - 55209574
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  55209602 tggacatgtattttgaaacggagggagta 55209574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 55209808 - 55209836
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  55209808 tggacatgtattttgaaacggagggagta 55209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 123 - 176
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  123 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagagagta 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 222 - 170
Alignment:
Q  333 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  222 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 45507 - 45454
Alignment:
Q  332 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 385  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  45507 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 45454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 100675 - 100647
Alignment:
Q  357 tggacatgtattttgaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  100675 tggacatgtattttgaaacggagggagta 100647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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