View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668-Insertion-2 (Length: 1155)
Name: NF5668-Insertion-2
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 7 - 743
Target Start/End: Original strand, 47339538 - 47340274
Alignment:
| Q |
7 |
acctgagcttcctgaacttggaagacgaaggagcaattgctatagctaatgctcttaaggcatcagctccttgccttgaagttctcgagatgagtggaaa |
106 |
Q |
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| T |
47339538 |
acctgagcttcctgaacttggaagacgaaggagcaattgctatagctaatgctcttaaggcatcagctcctcgccttgaagttctcgagatgagtggaaa |
47339637 |
T |
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| Q |
107 |
cgatattacagttgatgctgctcctgctatagcaaactgccttgcagccaagcagtttcttgccaagttgaacctctctgagaatgaactcaaagatgaa |
206 |
Q |
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| T |
47339638 |
caatattacagttgatgctgctcctgctatagcaaactgccttgcagccaagcagtttcttgccaagttgaacctctctgagaatgaactcaaagatgaa |
47339737 |
T |
|
| Q |
207 |
ggtgccatccagataagtaaggctttagaaggcctttcaaaattaaaggaaatcgatctaagttgcaacagaataaccagagacggggctcgacaattgg |
306 |
Q |
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| T |
47339738 |
ggtgccatccagataagtaaggctttagaaggcctttcacaattaaaggaaatcgatctaagttgcaacagaataaccagagacggggctcaacaattgg |
47339837 |
T |
|
| Q |
307 |
ctctcaccgtgttgcagaaggttgattttgaacgtctggacattgacggaaacttcatttctgatgaaggtattaaagagttaatggttatatttgaaaa |
406 |
Q |
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| T |
47339838 |
ctctcactgtgttgcagaaggttgattttgaacgtctggacattgacggaaacttcatttctgatgaaggtattaaagagttaatggttatatttgaaaa |
47339937 |
T |
|
| Q |
407 |
atctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgatgaagagggtggtgtggaggatgcactggaa |
506 |
Q |
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| T |
47339938 |
atctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgacgaagagggtggtgtggaggatgcactggaa |
47340037 |
T |
|
| Q |
507 |
tccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagctttccggttctactgcagaagtaactcttatgacattagtatcagtttattc |
606 |
Q |
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| T |
47340038 |
tccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagcttactggttctactgcagaagtaactcttatgacattagtatcagtttattc |
47340137 |
T |
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| Q |
607 |
attcacagaatcatatgtaaccgtcaagatgcatcatttcaccaaaatattgaatcattatgcgtatcttggtgatactttaattttggtgatctaacca |
706 |
Q |
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| T |
47340138 |
attcacagaatcatatgtaaccgtcaagatgcatcatttcaccaaaatattgaatcattatgcgtatcttggtgatactttaattttggtggtctaacca |
47340237 |
T |
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| Q |
707 |
ctgtgggtatctctggactagatatcgtaatcttgtc |
743 |
Q |
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| T |
47340238 |
ttgtgggtatctctggactagatatcgtaatcttgtc |
47340274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 809 - 974
Target Start/End: Original strand, 47340273 - 47340435
Alignment:
| Q |
809 |
tcgtcattagtgtattaacaccttggttatcatcagattcagtgttatgttgggtcaatttacatgatcgctgtgacgagtattggagctattctaatag |
908 |
Q |
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| T |
47340273 |
tcgtcattagtgtattaacacct-ggttatcatcagattcagtgttatgttgg-tcaatttacatgatcgctgtgacgagtattggagctattctaatag |
47340370 |
T |
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| Q |
909 |
atactccaaaaccgattagaatatgtttaattttattctatttattttcaataaagtcataacatt |
974 |
Q |
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| T |
47340371 |
atactccaaaactgattagaatatgtttaattttattcta-ttattttcaataaagtcataacatt |
47340435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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