View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5668-Insertion-5 (Length: 1021)
Name: NF5668-Insertion-5
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 314 - 976
Target Start/End: Complemental strand, 32396114 - 32395452
Alignment:
| Q |
314 |
tagctaagtaccattgaaatgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaacc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396114 |
tagctaagtaccattgaaatgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaacc |
32396015 |
T |
|
| Q |
414 |
aatttaggagtttgtgtttttccttgcaccaaagcaacaatagccaacgcagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396014 |
aatttaggagtttgtgtttttccttgcaccaaagcaacaatagccaacccagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaac |
32395915 |
T |
|
| Q |
514 |
tgtacttcaaagattctgacaaatttcaaaacagcataaaacaaaaaacaataacaaatatcatcaatctctgccacttaatctcctcaactcaaaacga |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32395914 |
tgtacttcaaagattctgacaaatttcaaaacagcataaaacaaaaaacaataacaaatatcatcaatctctgccacttaatctcctcaactcaaaacga |
32395815 |
T |
|
| Q |
614 |
aaaaagagcatgtttggaatcacgcagaatatgataaaatcacaatggcacatgatttagatgaaacttcaaagtatatcttttatcaaaataacattga |
713 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32395814 |
aaaaagagcatgtttggaattacgcagaatatgataaaatcacaatggcacatgatttagatgaaacttcaaagtatatcttttatcaaaataacattgg |
32395715 |
T |
|
| Q |
714 |
cacaccgtgattctaacaaatccactgccaatccgaacatggaattatcacggtgactcactgtgactccgaaagagcccctgtcataccaaacaagcac |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32395714 |
cacaccgtgattctaacaaatccactgccaatccgaacatggaattatcacggtgactcactgtgactccgacagagcccctgtcataccaaacaagcac |
32395615 |
T |
|
| Q |
814 |
taagaattaagaaatcatggaagaacattagaacactgacctacacgcttgtacaagaccaaaggaagcataacaagaaccaaggtgataaaaagagcaa |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32395614 |
taagaattaagaaatcatggaagaacattagaacactgacctacacgcttgtacaagaccaaaggaagcataacaagaaccaaggtgataaaaagagcaa |
32395515 |
T |
|
| Q |
914 |
cttccctttgaattccaccaatgaatcccaaaccactg-tgcaaaagtcccaagtgcacttcac |
976 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32395514 |
cttccc-tcgaattccaccaatgaatcccaaaccactgttgcaaaagtcccaagtgcacttcac |
32395452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 32396421 - 32396180
Alignment:
| Q |
7 |
agcttacacgtattaaactattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396421 |
agcttacacgtattaaactattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaa |
32396322 |
T |
|
| Q |
107 |
aaggtagccaaatagaccgattgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396321 |
aaggtagccaaatagaccgattgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaac |
32396222 |
T |
|
| Q |
207 |
ccaataggatgcactgcaagtaaaatcaaataactcatcagc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32396221 |
ccaataggatgcactgcaagtaaaatcaaataactcatcagc |
32396180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 322 - 514
Target Start/End: Complemental strand, 36139053 - 36138861
Alignment:
| Q |
322 |
taccattgaaatgaaatgtgaatgctgtaactacaacaggtactgcagtgaacaaatcaaagaatgatgtctggtagtctaatcgaggaaccaatttagg |
421 |
Q |
| |
|
||||||| |||||||||||| | || || |||| ||||| ||||||||||| | ||||||||| ||||| || | ||| || |||||||||||| | || |
|
|
| T |
36139053 |
taccattaaaatgaaatgtgtaggcagtgactatgacaggaactgcagtgaaaagatcaaagaaagatgtttgatggtccaaacgaggaaccaatcttgg |
36138954 |
T |
|
| Q |
422 |
agtttgtgtttttccttgcaccaaagcaacaatagccaacgcagaacaaatggtaacaaatgccacagcaagaagagttgatattccagaact |
514 |
Q |
| |
|
| |||||||||||||| ||| | |||||||| ||||| ||||||| | ||||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
36138953 |
tgattgtgtttttccttccacaagtgcaacaattgccaagacagaacatgttgtaacaaatgccacagctagaagagttgatactgcagaact |
36138861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 36139706 - 36139496
Alignment:
| Q |
25 |
tattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaaaaggtagccaaatagacc |
124 |
Q |
| |
|
|||||| ||| ||||||| | |||||||||||| || |||||||| ||||||||||||||||| |||| ||| ||||| || ||||| |||||||| || |
|
|
| T |
36139706 |
tattgagcaatgaaccaaatgaagaatcagcattgtggtcaaaatttattagaatgtctgattgagttgcatcaccaaataataggtaaccaaataggcc |
36139607 |
T |
|
| Q |
125 |
gattgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaacccaataggatgcactgca |
224 |
Q |
| |
|
|||| |||||| | | ||||| | |||| ||||| || |||||| ||||||||| ||||| | |||| ||||||||||| ||||| |||||| |
|
|
| T |
36139606 |
tattgaaaagtatatgagtgcacataggattaatgctattctcactgcttttttcatatctgatggttttccaagttcaaacccaattggatgtactgca |
36139507 |
T |
|
| Q |
225 |
agtaaaatcaa |
235 |
Q |
| |
|
||| |||||| |
|
|
| T |
36139506 |
tgtagaatcaa |
36139496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University