View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668-Insertion-6 (Length: 963)
Name: NF5668-Insertion-6
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 27763442 - 27763802
Alignment:
| Q |
7 |
agagtttgtaagaacaaagaagaagctgagacacaaagaatcacacatattactgttgaaagaaaccgtagaaaacaaatgaatgaacatcttgctgtac |
106 |
Q |
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| T |
27763442 |
agagtttgtaagaacaaagaagaagctgagacacaaagaatcacacatattactgttgaaagaaaccgtagaaaacaaatgaatgaacatcttgctgtac |
27763541 |
T |
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| Q |
107 |
ttcgttcactcatgcctgaatcctatgttcaaagggtttgttttctttcatatatatcacacnnnnnnnnnnattgtacttcatcttttgttgttgggat |
206 |
Q |
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| T |
27763542 |
ttcgttcactcatgcctgaatcctatgttcaaagggtttgttttcttttatat-tatcacac-----tttttattgtacttcatttattgttgttagcat |
27763635 |
T |
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| Q |
207 |
ttttcacaaatcttaaatatggtatttcctttaatagcaaagattgggagatagattcttttccaggtattgttgaggatgacaaagatgaagtactaga |
306 |
Q |
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| T |
27763636 |
ttttcacaaatctctattgtgttatttcccttaatagcaaagatggagagatagattcttttctaggtaatgttgagcatgacaaagatgaagtactaca |
27763735 |
T |
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| Q |
307 |
ataaagtagtatttaaattaactctttatgaccatcaatgaggtgggaatccaaagcatgcacaaatatgct |
378 |
Q |
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| T |
27763736 |
ataaaatagtat-----ttaacactttatgattatcaatgaggtgtggatccaaaacatgcacaaatatgct |
27763802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 693 - 917
Target Start/End: Original strand, 27763984 - 27764207
Alignment:
| Q |
693 |
ataactatcaatttgtattaaataagtgaaactttttaaaacaaacatgcatgctttaaaaacatgttctaaatagaactattagttcaattaattaaca |
792 |
Q |
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| T |
27763984 |
ataactatcaatttgtattaaataagtgaaactttttaaaacaaacatgcatgctttaaaaacatgttctaaatagaactattagttcaattaattaaca |
27764083 |
T |
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| Q |
793 |
tgaannnnnnnnngttttgttatagggtgaccaagcctcaatagtaggtggtgccatagagtttgtgaaggagttagagcatctcttgcaatcacttgaa |
892 |
Q |
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| T |
27764084 |
tgaattttttt--gttttgttatagggtgaccaagcctcaatagtaggtggtgccatagagtttgtgaaggagttagagcatctcttgcaatcacttgaa |
27764181 |
T |
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| Q |
893 |
gctagaaagttac-acttgtacaaca |
917 |
Q |
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| T |
27764182 |
gctagaaagttacaacttgtacaaca |
27764207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 452 - 569
Target Start/End: Original strand, 27763821 - 27763941
Alignment:
| Q |
452 |
aagtaaagaagcaaactaagactacattttatacat---ataaacaaggttttaaatcgcagtcgcgctcacatctagggttgcattatgatctttgatt |
548 |
Q |
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| T |
27763821 |
aagtaaagaagcaaactaagattaaattttatacaacaaataaacaaggttttaaatcatagtcgtgctcacatctagggttgcattatgatctttgatt |
27763920 |
T |
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| Q |
549 |
atcgcagttgaaattatgtta |
569 |
Q |
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| T |
27763921 |
gtcgcagttgaaattatgtta |
27763941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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