View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5668-Insertion-7 (Length: 900)

Name: NF5668-Insertion-7
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5668-Insertion-7
NF5668-Insertion-7
[»] chr3 (41 HSPs)
chr3 (7-900)||(28507719-28508609)
chr3 (268-705)||(28478847-28479260)
chr3 (493-900)||(26126275-26126679)
chr3 (496-900)||(26176329-26176730)
chr3 (489-900)||(26231838-26232246)
chr3 (615-900)||(26109619-26109902)
chr3 (615-900)||(26203911-26204194)
chr3 (737-900)||(28479264-28479426)
chr3 (268-455)||(28061078-28061260)
chr3 (268-455)||(28071503-28071685)
chr3 (489-900)||(26138414-26138786)
chr3 (407-898)||(28136876-28137339)
chr3 (268-455)||(28164326-28164508)
chr3 (722-900)||(17743904-17744081)
chr3 (722-900)||(19045224-19045401)
chr3 (489-576)||(26203828-26203915)
chr3 (489-587)||(26109519-26109617)
chr3 (721-900)||(8538508-8538686)
chr3 (749-900)||(28057742-28057892)
chr3 (749-900)||(28068167-28068317)
chr3 (722-900)||(28187216-28187393)
chr3 (615-783)||(27356914-27357081)
chr3 (722-900)||(11421781-11421958)
chr3 (721-900)||(28152209-28152387)
chr3 (728-817)||(27920846-27920935)
chr3 (742-900)||(27430396-27430553)
chr3 (530-588)||(28152497-28152555)
chr3 (530-596)||(28680491-28680557)
chr3 (728-817)||(27954815-27954904)
chr3 (187-250)||(28478586-28478649)
chr3 (530-596)||(8538345-8538411)
chr3 (722-900)||(28163206-28163383)
chr3 (532-596)||(27921044-27921108)
chr3 (525-591)||(27357083-27357149)
chr3 (525-591)||(27458047-27458113)
chr3 (750-847)||(27458249-27458346)
chr3 (721-873)||(27777125-27777276)
chr3 (735-793)||(8549710-8549768)
chr3 (721-867)||(28038102-28038247)
chr3 (854-900)||(18078756-18078802)
chr3 (534-591)||(27777383-27777440)
[»] chr7 (1 HSPs)
chr7 (424-898)||(8692145-8692591)
[»] scaffold0257 (2 HSPs)
scaffold0257 (722-900)||(19657-19834)
scaffold0257 (525-585)||(19906-19966)
[»] chr2 (7 HSPs)
chr2 (615-783)||(22400828-22400995)
chr2 (615-783)||(22966005-22966172)
chr2 (615-779)||(22792536-22792699)
chr2 (525-596)||(22792696-22792767)
chr2 (525-596)||(22966169-22966240)
chr2 (525-591)||(22400997-22401063)
chr2 (749-894)||(8021399-8021543)
[»] chr6 (1 HSPs)
chr6 (24-122)||(5951498-5951596)
[»] chr5 (1 HSPs)
chr5 (46-120)||(31951657-31951731)


Alignment Details
Target: chr3 (Bit Score: 850; Significance: 0; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 7 - 900
Target Start/End: Original strand, 28507719 - 28508609
Alignment:
Q  7 acttatgtctttaaatcttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28507719 acttatgtctttaaatcttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagat 28507818  T
Q  107 gtaatcatttccaaaaatgcaattaactctgcggttcctttcagaaaagagaaaatattaatgtgcaataactagtacggcacatttgcaaagagattaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28507819 gtaatcatttccaaaaatgcaattaactctgcggttcctttcagaaaagagaaaatattaatgtgcaataactagtacggcacatttgcaaagagattaa 28507918  T
Q  207 accaaatatagattcttagaggcttggttcatccatcatatgtatttcatatcttcatctgttgtatggaaaatccaataaaataacttcatcaatgtaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28507919 accaaatatagattcttagaggcttggttcatccatcatatgtatatcatatcttcatctgttgtatggaaaatccaataaaataacttcatcaatgtaa 28508018  T
Q  307 catattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508019 catattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttcacttcggatgagaaacgacgaaacgttacacccaagaaa 28508118  T
Q  407 taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508119 taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga 28508218  T
Q  507 taggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaaa 606  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28508219 taggggcatgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaag-aa 28508317  T
Q  607 cttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatcttt 706  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  28508318 cttccatttgttcgcttaaaatgcctatcttcaatcgcaagacttcaacatccttggtaacctgttgcttggaatctaataaattttgcaaggcatc-tt 28508416  T
Q  707 gggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaa 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508417 gggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaa 28508516  T
Q  807 tttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508517 tttagagtggcacgaccccaatacttccaacatactat-gggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 28508609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 268 - 705
Target Start/End: Original strand, 28478847 - 28479260
Alignment:
Q  268 ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc 367  Q
    |||||||||| || || |||||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  28478847 ttgtatggaagatacagtaaaataacttcatcaatgtaacatat-----aacaatcaataatagttttaaatacacaaacatagtaagaatctttagttc 28478941  T
Q  368 acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaag-------gttcccacaatgaaaagcataacaaaggttcc 460  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||       |||||||||||||||||||||||||||         
T  28478942 actttggatgagaaacgacgaaacgttatacccaagaaatgaacaatattgaagtacaaaggttctcagttcccacaatgaaaagcataacaaag----t 28479037  T
Q  461 cacaatgatggaatataattacttgaagatatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcag 560  Q
      ||||||| ||||  ||||||| ||| ||||| |||||||||||| |||||||| ||||||  ||||||||||||||||| ||||||||||||||||||    
T  28479038 agcaatgatagaattaaattactagaaaatataatctaatagccgaaaggggcacttaaaaccgcctcttgttgaatgatagtctccaaaacagcttcag 28479137  T
Q  561 aggatgtcaattgttgcttaagatcttccacctgttcactaagaaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatcct 660  Q
    ||||||||||||||||||||||||||||||| |||| ||                      ||||||||||||||||||| ||||| ||||| |||||||    
T  28479138 aggatgtcaattgttgcttaagatcttccacatgttgac----------------------ttaaaatgcctatcttcaaacgcaacacttcaacatcct 28479215  T
Q  661 tggtaacctgttgcttgaaatctaataaattttgcaaggcatctt 705  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  28479216 tggtaacctgttgctttgaatccaataatttttgcaaggcatctt 28479260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 493 - 900
Target Start/End: Original strand, 26126275 - 26126679
Alignment:
Q  493 agtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacc 592  Q
    |||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||     
T  26126275 agtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccaca 26126374  T
Q  593 tgttcactaagaaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattt 692  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| |||| |||| ||||  ||     
T  26126375 tgttcactaag-aacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttc 26126473  T
Q  693 tgcaaggcatctttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgt 792  Q
    |  ||  |||| ||| || ||||  || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || |||||||||    
T  26126474 tttaatacatc-ttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgt 26126572  T
Q  793 attaactccacaaatttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaa 892  Q
    | ||||||| |||||| ||||||| | ||||||||||||||||||| ||| | ||||||  || |||||||| |||||||||||||||||||| ||||||    
T  26126573 aataactcctcaaattcagagtggaatgaccccaatacttccaacacactgt-gggttttgagaaatttcaacagttcagctagtaaattgtaagcacaa 26126671  T
Q  893 cccttgta 900  Q
    ||||||||    
T  26126672 cccttgta 26126679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 496 - 900
Target Start/End: Original strand, 26176329 - 26176730
Alignment:
Q  496 ctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgt 595  Q
    ||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||| |||    
T  26176329 ctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccacatgt 26176428  T
Q  596 tcactaagaaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgc 695  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||| |||| |||| ||||  || |      
T  26176429 tcactaag-aacttccatttgttcacttaaaatgcctatcttcaagcgcaacacttcaacttctttggtaacatgttccttggaatccaatagtttcttt 26176527  T
Q  696 aaggcatctttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtatt 795  Q
    ||  |||| ||| || ||||  || |||||| |||||| || ||| || |||||||||||||||||||||||||||||||| || || |||||||||| |    
T  26176528 aatacatc-ttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaat 26176626  T
Q  796 aactccacaaatttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaaccc 895  Q
    |||||| |||||| ||||||| | || |||||||||||||||| ||| | ||||||  ||||||||||| |||||||||||||||||||| |||||||||    
T  26176627 aactcctcaaattcagagtggaatgagcccaatacttccaacacactgt-gggttttgaggaatttcaacagttcagctagtaaattgtaagcacaaccc 26176725  T
Q  896 ttgta 900  Q
    |||||    
T  26176726 ttgta 26176730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 489 - 900
Target Start/End: Original strand, 26231838 - 26232246
Alignment:
Q  489 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 588  Q
    |||||||||||||||| | |||||||| |||| | |||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||    
T  26231838 atatagtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaatagcttgagaggatgtcaattgatgcttaagaacttc 26231937  T
Q  589 cacctgttcactaagaaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataa 688  Q
    ||| ||||||||||| |||||||||||||||||| ||||||| ||||||||| || || ||||| || || |||||||| |||| |||| |||| ||||     
T  26231938 cacatgttcactaag-aacttccatttgttcactcaaaatgcgtatcttcaagcgtaaaacttcaacttctttggtaacatgttccttggaatccaatag 26232036  T
Q  689 attttgcaaggcatctttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatc 788  Q
     || |  ||  |||| ||| ||  |||  || |||||| |||||| |||||| || |||||||||||||||||||||||||||||||| || || |||||    
T  26232037 tttctttaatacatc-ttgagattcttgcatatcaggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatc 26232135  T
Q  789 ttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggc 888  Q
    ||||| ||||||| |||||| ||||||| | || |||||||||||||||| ||||| | ||||  |||||||||| ||||||||||| ||||||||||||    
T  26232136 ttgtaataactcctcaaattcagagtggaatgagcccaatacttccaacacactat-gagttttgaggaatttcagtagttcagctaataaattgtaggc 26232234  T
Q  889 acaacccttgta 900  Q
    ||||||||||||    
T  26232235 acaacccttgta 26232246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 615 - 900
Target Start/End: Original strand, 26109619 - 26109902
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| ||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||| |||| ||||| || ||||||||||||| | || |||    
T  26109619 tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatctt-gtgatact 26109717  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagt 814  Q
    | ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||    
T  26109718 tgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccataaattcagagt 26109817  T
Q  815 ggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    || | || || ||| ||||||| ||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  26109818 ggtatgatcctaattcttccaatatattat-gggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 26109902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 615 - 900
Target Start/End: Original strand, 26203911 - 26204194
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| ||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||| |||| ||||| || ||||||||||||| | || |||    
T  26203911 tgttgacttaaaatgcctatcttcaaacgcaacgcttcaacatccttggtaacctgttgcttggaatccaataatttctgcaaggcatctt-gtgatact 26204009  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagt 814  Q
    | ||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||    
T  26204010 tgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgtgcgcatcttgtaataactccagaaattcagagt 26204109  T
Q  815 ggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    || | || || ||||||||||| | | ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  26204110 ggaatgagcctaatacttccaatacattat-gggttttgaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 26204194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 737 - 900
Target Start/End: Original strand, 28479264 - 28479426
Alignment:
Q  737 gcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaa 836  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  28479264 gcctctccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaa 28479363  T
Q  837 catactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28479364 cacactat-gggtttcaaggaatttcaatagttcggctagtaaattgtaggcacaacccttgta 28479426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28061260 - 28061078
Alignment:
Q  268 ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc 367  Q
    ||||||| || || || ||||||||||||||||||||||||||     ||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  28061260 ttgtatgaaagattcagtaaaataacttcatcaatgtaacata-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc 28061166  T
Q  368 acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag 455  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28061165 acttcggatgagaaacgacgaaacgttacaccgaagaaatgaacaatattgaagtacaaaggttcccacaatggaaagcataacaaag 28061078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28071685 - 28071503
Alignment:
Q  268 ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc 367  Q
    ||||||| || || || ||||||||||||||||||||||||||     ||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  28071685 ttgtatgaaagattcagtaaaataacttcatcaatgtaacata-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc 28071591  T
Q  368 acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag 455  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28071590 acttcggatgagaaacgacgaaacgttacaccgaagaaatgaacaatattgaagtacaaaggttcccacaatggaaagcataacaaag 28071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 489 - 900
Target Start/End: Original strand, 26138414 - 26138786
Alignment:
Q  489 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 588  Q
    |||||||||||||||| ||||||||||  ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||        
T  26138414 atatagtctaatagccaataggggcactcaaaaccacctcttgttgaatgatacgctccaaaacaacttcagaggatgtcaactgttgcttaagat---- 26138509  T
Q  589 cacctgttcactaagaaacttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataa 688  Q
                      ||||||  |||| |||||||||||||||||||||  |||| | ||| |||||||||||||||||||||||| |||| |||||    
T  26138510 ------------------cttccacatgttgacttaaaatgcctatcttcaagtgcaacaattcaacatccttggtaacctgttgcttgtaatccaataa 26138591  T
Q  689 attttgcaaggcatctttgggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatc 788  Q
     || |||       ||||    ||     || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||    
T  26138592 tttctgc-------cttt----ca-----atatcaggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatc 26138675  T
Q  789 ttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggc 888  Q
    ||||| |||||||||||||| ||||||| | |  |||||||||||||| ||||||| ||||||  |||||||||||||||| ||||||||  ||||||||    
T  26138676 ttgtaataactccacaaattcagagtggaatgtgcccaatacttccaatatactat-gggttttgaggaatttcaatagtttagctagtacgttgtaggc 26138774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 407 - 898
Target Start/End: Complemental strand, 28137339 - 28136876
Alignment:
Q  407 taaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccga 506  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||    |  |||||||| |||| || |||||||| ||||||||||||| || |    
T  28137339 taaaaaatattgaagaacaaaggttcccacaatgaaaagcataacaaag----cagcaatgatgaaataaaagtacttgaaaatatagtctaataaccaa 28137244  T
Q  507 taggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaaa 606  Q
    |||| |||| ||||||  ||||||||||||| ||| ||| ||||||||||| ||||||||||||||| |||||||||||                         
T  28137243 taggtgcacttaaaaccgcctcttgttgaattatattcttcaaaacagctttagaggatgtcaattgatgcttaagatc--------------------- 28137165  T
Q  607 cttccatttgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatcttt 706  Q
     |||||  |||| |||||||||  ||||||| ||  |||| ||||| || ||||||||||  ||||||||| |||| ||||| ||||||| ||| ||||     
T  28137164 -ttccacatgttgacttaaaatctctatctttaaatgcaacacttcaacttccttggtaatttgttgcttggaatccaataatttttgcatggcgtctt- 28137067  T
Q  707 gggacacttttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaa 806  Q
    | || | || ||| |||||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| ||||||||||| ||| ||  ||||||||    
T  28137066 gagatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagatccacaaa 28136967  T
Q  807 tttagagtggcacgaccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttg 898  Q
    || ||||||||| || || ||||| ||||| | ||||| | |||||||||||||||||||| || || | ||| ||||| ||||||||||||    
T  28136966 ttcagagtggcatgagcctaatacatccaagacactat-gagtttcaaggaatttcaatagctctgccaataagttgtaagcacaacccttg 28136876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 28164508 - 28164326
Alignment:
Q  268 ttgtatggaaaatccaataaaataacttcatcaatgtaacatattatacaacaatcaataatagttttcaatacacaaacataataagactctttagttc 367  Q
    ||||||| || || || |||||||||||||||||||||||||      ||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  28164508 ttgtatgaaagattcagtaaaataacttcatcaatgtaacatg-----caacaatcactaatagttttaaatacacaaacataatgagactctttagttc 28164414  T
Q  368 acttcggatgagaaacgacgaaacgttacacccaagaaataaacaatatcgaagtacaaaggttcccacaatgaaaagcataacaaag 455  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||    
T  28164413 acttcggatgagaaacgacgaaacgttacacccaagaaatgaacaatattgaagtacaaatgttcccacaatggaaagcataacaaag 28164326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 722 - 900
Target Start/End: Original strand, 17743904 - 17744081
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    ||||||||||||||||| | ||||||||||||||||| | ||||||||||  ||| |||||| ||||||||| |||||| ||||||| ||||| ||  ||    
T  17743904 caggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttga 17744003  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || ||||||| ||||  | |||| ||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  17744004 acctaacacatccaacacacta-cgagtttgaaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 17744081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 722 - 900
Target Start/End: Original strand, 19045224 - 19045401
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    ||||||||||||||||| | ||||||||||||||||| | ||||||||||  ||| |||||| ||||||||| |||||| ||||||| ||||| ||  ||    
T  19045224 caggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttga 19045323  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || ||||||| ||||  | |||| ||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  19045324 acctaacacatccaacacacta-cgagtttgaaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 19045401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 489 - 576
Target Start/End: Original strand, 26203828 - 26203915
Alignment:
Q  489 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttg 576  Q
    |||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26203828 atatagtctaatagccaataggggaactgaaaaccacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaactgttg 26203915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 489 - 587
Target Start/End: Original strand, 26109519 - 26109617
Alignment:
Q  489 atatagtctaatagccgataggggcacgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatctt 587  Q
    ||||| |||||||||| |||||||| | |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  26109519 atataatctaatagccaataggggcccttaaaaccacctcttgttgaatgatactctccaagaaagcttcagaggatgtcaattgttgattaagttctt 26109617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 721 - 900
Target Start/End: Original strand, 8538508 - 8538686
Alignment:
Q  721 tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacg 820  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |  | ||| ||||||||| |||||| ||||||| ||| ||||  |    
T  8538508 tcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatcttgtaataactcaacaaattcagattggcttg 8538607  T
Q  821 accccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    | || || || ||||||| | ||| | ||||  |||||||||||||| ||||||||  | ||||||||| ||||||||||    
T  8538608 aacctaacacatccaacacaatat-gagtttggaggaatttcaatagctcagctagacagttgtaggcataacccttgta 8538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 749 - 900
Target Start/End: Complemental strand, 28057892 - 28057742
Alignment:
Q  749 catccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggg 848  Q
    |||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||||| ||||||||  || || || || ||||||| ||||| | |    
T  28057892 catccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactat-gag 28057794  T
Q  849 tttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    |||  |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  28057793 tttggaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 28057742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 749 - 900
Target Start/End: Complemental strand, 28068317 - 28068167
Alignment:
Q  749 catccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggg 848  Q
    |||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||||| ||||||||  || || || || ||||||| ||||| | |    
T  28068317 catccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactat-gag 28068219  T
Q  849 tttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    |||  |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  28068218 tttggaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 28068167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 722 - 900
Target Start/End: Complemental strand, 28187393 - 28187216
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    |||| |||||||||||  | |||| | |||||||||| |||||||||||||||||  ||||| ||||||||| |||||| ||||||| ||||||||  ||    
T  28187393 caggcaacaaagcgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttga 28187294  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || ||||||| ||||| | ||||  |||||||||||||| ||||||||  | ||||||||| ||||||||||    
T  28187293 acctaacacatccaacacactat-gagtttggaggaatttcaatagctcagctaggcagttgtaggcataacccttgta 28187216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 615 - 783
Target Start/End: Complemental strand, 27357081 - 27356914
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| |||||||||| |||| ||||| ||||| ||||| || || ||||  || ||||||||| |||| || |  |||||||| ||||||| | || |||    
T  27357081 tgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgcatctt-gagagact 27356983  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 783  Q
    ||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  27356982 tttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 27356914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 722 - 900
Target Start/End: Complemental strand, 11421958 - 11421781
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    ||||||||||||||||| | ||||||||||||||||| || || ||||||  ||| || ||| |||||||||||||||| |||||| ||||||  |  ||    
T  11421958 caggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaaggaaatctacgcacatcttgtattaactcaacaaatgtagagtttcttga 11421859  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || || |||| ||||| |||| |  |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  11421858 acctaacacgtctaacacactat-gggtctggaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 11421781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 721 - 900
Target Start/End: Complemental strand, 28152387 - 28152209
Alignment:
Q  721 tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacg 820  Q
    |||||||||||||||||| | |||||| |||||||||| |||||||||||   ||| || ||| ||||||||| |||||| ||||||| ||||| ||  |    
T  28152387 tcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatcttgtaataactcaacaaattcagagttgcttg 28152288  T
Q  821 accccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    | || || || ||||||| ||||| | |||| ||||||||||||||| || |||||    ||||||||| ||||||||||    
T  28152287 aacctaacacatccaacacactat-gagtttgaaggaatttcaatagctctgctaggctgttgtaggcataacccttgta 28152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 728 - 817
Target Start/End: Complemental strand, 27920935 - 27920846
Alignment:
Q  728 acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 817  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| ||||||||    
T  27920935 acaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggc 27920846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 742 - 900
Target Start/End: Original strand, 27430396 - 27430553
Alignment:
Q  742 tcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatac 841  Q
    ||||||||||||||||| ||||||||||||  ||| || ||| ||||||||| |||||| ||||||| ||||||||  || || |  || ||||||| |     
T  27430396 tcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaacacat 27430495  T
Q  842 tatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    |||| || ||  |||||||||||||| ||||||||  | ||||||||| ||||||||||    
T  27430496 tatgtgg-ttggaggaatttcaatagctcagctaggcagttgtaggcataacccttgta 27430553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 28152555 - 28152497
Alignment:
Q  530 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 588  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  28152555 tgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagatcttc 28152497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 28680491 - 28680557
Alignment:
Q  530 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 596  Q
    |||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  28680491 tgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatcttccacatgtt 28680557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 728 - 817
Target Start/End: Complemental strand, 27954904 - 27954815
Alignment:
Q  728 acaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggc 817  Q
    |||||||| || | |||||||||||||||||||| |||||||||||| | |||||| ||||||||| ||| || ||||||| ||||||||    
T  27954904 acaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatcttgtaataaatcaacaaattcagagtggc 27954815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 28478586 - 28478649
Alignment:
Q  187 cacatttgcaaagagattaaaccaaatatagattcttagaggcttggttcatccatcatatgta 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||||| ||||    
T  28478586 cacatttgcaaagagattaaaccaaatatagattcctagaggctcggttcaaacatcatgtgta 28478649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 8538345 - 8538411
Alignment:
Q  530 tgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 596  Q
    |||||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||| ||||    
T  8538345 tgttgaatgatagtctccaaaatagcttcagaaactgtcaattgttgcttaagatcttccacatgtt 8538411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 722 - 900
Target Start/End: Complemental strand, 28163383 - 28163206
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    |||| |||||||||||| | || | | |||||||||| ||||||| |||   ||| ||||| |||||||||| |||||| ||||||| ||||||||  ||    
T  28163383 caggcaacaaagcgcgcttttcgatatcatccaaccattccttatgaaatggaaatctgcgtgcatcttgtagtaactcaacaaattcagagtggcttga 28163284  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || ||||||| ||||| | ||||  |||||||||||||| || |||||  ||||||||| | ||||||||||    
T  28163283 acctaacacatccaacacactat-gagtttggaggaatttcaatagctccgctagacaattgtaggtataacccttgta 28163206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 532 - 596
Target Start/End: Complemental strand, 27921108 - 27921044
Alignment:
Q  532 ttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 596  Q
    |||||||||| |||||||||||  |||||| ||||||||||| ||||||||||||||||| ||||    
T  27921108 ttgaatgatagtctccaaaacatattcagaagatgtcaattgatgcttaagatcttccacatgtt 27921044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 27357149 - 27357083
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 591  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  27357149 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 27357083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 27458047 - 27458113
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 591  Q
    |||||| |||||| ||||||| ||||||||  || |||||||||||||| |||||||||||||||||    
T  27458047 cctctttttgaataatactcttcaaaacagtctccgaggatgtcaattgatgcttaagatcttccac 27458113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 750 - 847
Target Start/End: Original strand, 27458249 - 27458346
Alignment:
Q  750 atccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatggg 847  Q
    |||||||||| ||||||||||| ||||||||||  ||||||||| |||||  |||||||||||| |||  || ||||| || || |||| ||||||||    
T  27458249 atccaaccaagccttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacacatcaaacacactatggg 27458346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 721 - 873
Target Start/End: Complemental strand, 27777276 - 27777125
Alignment:
Q  721 tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacg 820  Q
    |||| ||||||||| ||  | |||||||||||||||||||| |||||||||||| | |||||  ||||||||| ||||||  |||| | |||| |||  |    
T  27777276 tcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaaccacatctgcgtacatcttgtaataactcatcaaactcagagcggcttg 27777177  T
Q  821 accccaatacttccaacatactatggggtttcaaggaatttcaatagttcagc 873  Q
    | || || || ||||||| ||||| || |||  |||||||||||||| |||||    
T  27777176 aacctaacacatccaacacactat-ggttttggaggaatttcaatagctcagc 27777125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 735 - 793
Target Start/End: Complemental strand, 8549768 - 8549710
Alignment:
Q  735 gcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgta 793  Q
    |||| ||||||||| ||||||||||||||||||||||||| |  ||||| |||||||||    
T  8549768 gcgcatctcaacacgatccaaccaatccttatcaaaaccacatttgcgcacatcttgta 8549710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 867
Target Start/End: Complemental strand, 28038247 - 28038102
Alignment:
Q  721 tcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacg 820  Q
    |||||||||||||| ||| | || |||||||| |||||||| ||||| |||| | | |||||| |||||||||  ||||| ||||||| || |||||  |    
T  28038247 tcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatcttgtaacaactcaacaaattcagtgtggcttg 28038148  T
Q  821 accccaatacttccaacatactatggggtttcaaggaatttcaatag 867  Q
    | || || || ||||||| ||||| | ||||  ||||||||||||||    
T  28038147 aacctaacacatccaacacactat-gcgtttggaggaatttcaatag 28038102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 854 - 900
Target Start/End: Original strand, 18078756 - 18078802
Alignment:
Q  854 aggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
    |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  18078756 aggaatttcaatagctcagctaggcaattgtaggcataacccttgta 18078802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 591
Target Start/End: Complemental strand, 27777440 - 27777383
Alignment:
Q  534 gaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 591  Q
    |||||| | |||||||| ||||||| || ||||| ||||| |||||||||||||||||    
T  27777440 gaatgagagtctccaaatcagcttctgaagatgttaattgatgcttaagatcttccac 27777383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 424 - 898
Target Start/End: Original strand, 8692145 - 8692591
Alignment:
Q  424 caaaggttcccacaatgaaaagcataacaaaggttcccacaatgatggaatataattacttgaagatatagtctaatagccgataggggcacgtaaaact 523  Q
    |||||||||||||||||||||| |||||||||   |    || |||| |||| || |||  ||| |||||||||||||||| ||| |||||| |||||||    
T  8692145 caaaggttcccacaatgaaaagtataacaaagtagc----aaagatgaaatagaagtacaagaaaatatagtctaatagccaataagggcacttaaaact 8692240  T
Q  524 acctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgttcactaagaaacttccatttgttcactt 623  Q
     ||||||||||||| ||| ||| |||||||||||  ||| |||||||||| ||||||||||| ||||| |||| ||                      ||    
T  8692241 gcctcttgttgaattatattcttcaaaacagctttggagcatgtcaattgatgcttaagatcctccacatgttgac----------------------tt 8692318  T
Q  624 aaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacacttttatttca 723  Q
    |||||  ||||||||||  |||| ||||| || ||||||||||||||||||||| |||| |||||  |||||| ||| || ||| || | || ||| |||    
T  8692319 aaaatctctatcttcaaatgcaacacttcaacttccttggtaacctgttgcttggaatccaataatgtttgcatggcgtc-ttgcgatatttgtatatca 8692417  T
Q  724 ggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgacc 823  Q
    ||||||| ||| || || || |||| |||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||| ||||||||| || |    
T  8692418 ggaaacatagcccgtctttcgacactatccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaac 8692517  T
Q  824 ccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttg 898  Q
    | ||||| ||||| | ||||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  8692518 ctaatacatccaagacactat-gagtttcaaggaatttcaatagctcagccagtaagttgtaggcacaacccttg 8692591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 722 - 900
Target Start/End: Complemental strand, 19834 - 19657
Alignment:
Q  722 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 821  Q
    ||||||||||||||||| | || ||| |||||||||| | ||||||||||||| |  ||||| ||||||||| |||||| ||||||| ||||||||  ||    
T  19834 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttga 19735  T
Q  822 ccccaatacttccaacatactatggggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacccttgta 900  Q
     || || || ||||||| ||||| | ||||  |||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  19734 acctaacacatccaacacactat-gagtttggaggaatttcaatagctcagctaggcaattgtaggcataacccttgta 19657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 585
Target Start/End: Complemental strand, 19966 - 19906
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatc 585  Q
    ||||||||||| |||| |||| |||||||||||||||||| | |||||| |||||||||||    
T  19966 cctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatc 19906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 615 - 783
Target Start/End: Complemental strand, 22400995 - 22400828
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| |||||||||| |||| ||||| ||||| ||||| || || ||||  || ||||||||| |||| || |  |||||||| ||||||| | || |||    
T  22400995 tgttgacttaaaatgtctattttcaaacgcaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgcatctt-gagagact 22400897  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 783  Q
    ||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  22400896 tttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 22400828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 615 - 783
Target Start/End: Complemental strand, 22966172 - 22966005
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| |||||||||| |||| ||||| | ||| ||||| || || ||||  || ||||||||| |||| || |  |||||||| ||||||| | || |||    
T  22966172 tgttgacttaaaatgtctattttcaaacccaacacttcaacttctttggagacttgttgcttggaatccaacagtttttgcaatgcatctt-gagagact 22966074  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgc 783  Q
    ||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||    
T  22966073 tttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgcgc 22966005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 615 - 779
Target Start/End: Complemental strand, 22792699 - 22792536
Alignment:
Q  615 tgttcacttaaaatgcctatcttcaatcgcaagacttcgacatccttggtaacctgttgcttgaaatctaataaattttgcaaggcatctttgggacact 714  Q
    |||| |||||||||| |||| ||||| | ||| ||||| || || ||||  || ||||| ||| |||| || |  |||||||| ||||||| | || |||    
T  22792699 tgttgacttaaaatgtctattttcaaacacaacacttcaacttctttggagacttgttgattggaatccaacagtttttgcaatgcatctt-gagagact 22792601  T
Q  715 tttatttcaggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagct 779  Q
    ||||| || | ||||||||| || || ||||||| ||||||||||||||||||||||||||||||    
T  22792600 tttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagct 22792536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 596
Target Start/End: Complemental strand, 22792767 - 22792696
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 596  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| ||||||||||||||||| ||||    
T  22792767 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgtt 22792696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 596
Target Start/End: Complemental strand, 22966240 - 22966169
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacctgtt 596  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| ||||||||||||||||| ||||    
T  22966240 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgtt 22966169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22401063 - 22400997
Alignment:
Q  525 cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccac 591  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||||| ||| |||||||||||||||||    
T  22401063 cctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccac 22400997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 894
Target Start/End: Complemental strand, 8021543 - 8021399
Alignment:
Q  749 catccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacgaccccaatacttccaacatactatgggg 848  Q
    |||||||||| ||||||||||||  ||| ||| |  ||||||||| |||||| | ||||| |||| |||  || || || || ||||||| ||||| | |    
T  8021543 catccaaccattccttatcaaaaggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaacacatccaacacactat-gag 8021445  T
Q  849 tttcaaggaatttcaatagttcagctagtaaattgtaggcacaacc 894  Q
    ||| ||||||||||||||| || |||||  | ||||||||| ||||    
T  8021444 tttgaaggaatttcaatagctcggctagacagttgtaggcataacc 8021399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 5951498 - 5951596
Alignment:
Q  24 ttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaaaa 122  Q
    ||||||||| ||| ||||| | |||| |||||||||||||||| ||||||| ||  ||||| ||||||||| ||||||| ||||| || ||||||||||    
T  5951498 ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgtgccgggttagtacactcactatatggatagtctgatgtcataatttccaaaa 5951596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 31951657 - 31951731
Alignment:
Q  46 cgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaa 120  Q
    |||| |||||||||||||||| ||||| |  |  ||||||||||||||| |||| |||||||| | |||||||||    
T  31951657 cgatgtcactttcttgtatatctgtgctggattagtacattcactatatggataatcagatgtgagcatttccaa 31951731  T

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