View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_high_10 (Length: 344)
Name: NF5668_high_10
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 39824733 - 39824499
Alignment:
| Q |
18 |
cttagcatgtgatccaacatatcttaaac--gctctgtaatcatattaggtttttatattgggtgaaattcatcttttgaaaatcgacttacaagatggg |
115 |
Q |
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| T |
39824733 |
cttagcatgtaatctaacatatcttagacaggctctgtaatcttattagatttttatattgggtgaaattcatcttttgaaaatcgatttacaagatggg |
39824634 |
T |
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| Q |
116 |
gattacactcatttataaattcatgatcaagtcctagtttatttaatgtgagactctttaacaactaataggttctagtttatggttttgtggaannnnn |
215 |
Q |
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| T |
39824633 |
gattacactcatttataaattcatgatcaagtcctagtttatttaatgtgagactctttaacaactaataggttctagtttatggttttgtggaattttt |
39824534 |
T |
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| Q |
216 |
nngttatgtttcttgtaaatggatttgaatatcac |
250 |
Q |
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| T |
39824533 |
ttgttatgtttcttgtaaatggatttgaatatcac |
39824499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 39824345 - 39824261
Alignment:
| Q |
246 |
atcacaagaaaacacttcttccacccagtggatcaaagctgacttgtcatcttagcatcaataatattaattaatgatttctata |
330 |
Q |
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| T |
39824345 |
atcacaagaaaacacttcttccacccagtggatcaaagctgacttgtcatcttagcatcaataatattaattaatgatttctata |
39824261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 39834637 - 39834589
Alignment:
| Q |
277 |
atcaaagctgacttgtcatcttagcatcaataatattaattaatgattt |
325 |
Q |
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| T |
39834637 |
atcaaagctgacttgtcatcttagcatcaataatattagttgatgattt |
39834589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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