View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_high_12 (Length: 306)
Name: NF5668_high_12
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 16087435 - 16087149
Alignment:
| Q |
1 |
caaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgtcttgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087435 |
caaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgtcttgcag |
16087336 |
T |
|
| Q |
101 |
cctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatagccgagttgtatgattcctgtaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16087335 |
cctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatggccgagttgtatgattcctgtaaaat |
16087236 |
T |
|
| Q |
201 |
ataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatga |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087235 |
ataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatga |
16087149 |
T |
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