View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5668_high_4 (Length: 522)

Name: NF5668_high_4
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5668_high_4
NF5668_high_4
[»] chr1 (6 HSPs)
chr1 (35-506)||(41452942-41453413)
chr1 (328-460)||(41431165-41431297)
chr1 (35-457)||(41425755-41426164)
chr1 (339-456)||(41441817-41441934)
chr1 (37-210)||(41441971-41442146)
chr1 (128-178)||(41431446-41431496)
[»] chr2 (3 HSPs)
chr2 (82-506)||(33362944-33363364)
chr2 (328-458)||(33369411-33369541)
chr2 (35-210)||(33369667-33369842)
[»] chr7 (2 HSPs)
chr7 (43-281)||(7763254-7763490)
chr7 (328-446)||(7763517-7763635)
[»] scaffold0648 (2 HSPs)
scaffold0648 (328-457)||(5244-5373)
scaffold0648 (109-210)||(5479-5580)
[»] scaffold0274 (3 HSPs)
scaffold0274 (328-457)||(18085-18214)
scaffold0274 (409-460)||(13707-13758)
scaffold0274 (109-199)||(17878-17968)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 35 - 506
Target Start/End: Complemental strand, 41453413 - 41452942
Alignment:
Q  35 ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453413 ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac 41453314  T
Q  135 aagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggatttttctttctagcccaacttgggttttg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||    |||||||||||||||||||||||    
T  41453313 aagctatttagtataaagaataccaaactcacctggcaaatgctttttcaaaatcttccactctttctgaatt----tttctagcccaacttgggttttg 41453218  T
Q  235 ctgaggaaataagtgatatgtaaatccatataattaagatcagaactgacaaaagtacgtctgtaagagacattttgagaaaag----nnnnnnnnncta 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||             |||    
T  41453217 ctgaggaaataagtgatatgtaaatccatataattaagatcagaactgaaaaaagtacgtctgtaagagacatttttagaaaagaaaaaaaaaaaaacta 41453118  T
Q  331 acctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcgt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41453117 acctgcttcatggaggaattatttttactaaaataatggtctgaagtgtcagtgacaatgtcaaattacttaaaacttcgaagtttcttcagagtttcgt 41453018  T
Q  431 tttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacttccgactctggcagatttgag 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  41453017 tttcgggttcatcagtgattctcaaacccgctgtgtccacagctgctccatcacgtccggctctggcagatttgag 41452942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 328 - 460
Target Start/End: Complemental strand, 41431297 - 41431165
Alignment:
Q  328 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 427  Q
    |||||||||||||||||||||| ||||||| |||| |||||||| ||| |||  | ||||  ||||||||||||||| ||||||||||||||||||||||    
T  41431297 ctaacctgcttcatggaggaatgatttttaataaagtaatggtccgaactgtccgcgacagcgtcaaattgcttaaagcttcgaagtttcttcagagttt 41431198  T
Q  428 cgttttcgggttcatcagtgattctcaaacccg 460  Q
    | ||||| ||||||||||||||| |||||||||    
T  41431197 cattttcaggttcatcagtgattgtcaaacccg 41431165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 35 - 457
Target Start/End: Complemental strand, 41426164 - 41425755
Alignment:
Q  35 ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac 134  Q
    ||||||||||||||||| | || ||| | | |||||||| | ||| |||||| ||| |  |||||||  |||||||||||||| |||| ||||| ||| |    
T  41426164 ttaacaatgattggatataccctatacgttaaagtccatcagctcgaaaaaggaaaattgatactaaatgtgatatgtgatattacatggaaaaaatttc 41426065  T
Q  135 aagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggatttttctttctagcccaact---tgggtt 231  Q
    |||| ||||||||  |||||| | ||||||||||||||| ||||| | |||||||||||||||||   || |||||     ||||||||||   ||| ||    
T  41426064 aagcaatttagtaacaagaatgctaaactcacccggcaagtgcttctccaaaatcttccactcttcccggtttttt-----tagcccaactctttggatt 41425970  T
Q  232 ttgctgaggaaataagtgatatgtaaatccatataattaagatcagaactgacaaaa-gtacgtctgtaagagacatt-ttgagaaaagnnnnnnnnnct 329  Q
    ||||| || ||||||    |||| ||||||||||||||||||| ||| |||| | || ||| | || ||| |||  || || ||||||          ||    
T  41425969 ttgctcagaaaataa----tatgcaaatccatataattaagattagagctgaaacaatgtatgcctttaaaagattttgtttagaaaa---------act 41425883  T
Q  330 aacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcg 429  Q
    ||| | |  ||||||||||| | ||||| |||| |||||||||||||||| | ||| | ||||||||||||||||||||| ||||||  ||||||||||     
T  41425882 aacatacgccatggaggaatgacttttaataaagtaatggtctgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagtttca 41425783  T
Q  430 ttttcgggttcatcagtgattctcaaac 457  Q
    ||||||||||||||||||||| ||||||    
T  41425782 ttttcgggttcatcagtgattgtcaaac 41425755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 456
Target Start/End: Complemental strand, 41441934 - 41441817
Alignment:
Q  339 catggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcgttttcgggt 438  Q
    |||| ||||| |||||| | |||| | |||||||||| |||  |||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  41441934 catgaaggaaatattttcaataaagttatggtctgaaatgtcggtgacagtgtcaaattgcttaaaactttgaagtttcctcagagtttcattttcgggt 41441835  T
Q  439 tcatcagtgattctcaaa 456  Q
    |||||||||||| |||||    
T  41441834 tcatcagtgattgtcaaa 41441817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 41442146 - 41441971
Alignment:
Q  37 aacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtg--atatgacatcgaaaatattac 134  Q
    ||||||||||| ||||||||||||| || ||||||||   ||| |||| |||||| |||| ||||  |||||||| |  ||||||||| ||| |||||||    
T  41442146 aacaatgattgaatacaacccatatagtaaagtccattggctcgaaaaggtaaatcgaattctaaatgtgatatgagtcatatgacattgaagatattac 41442047  T
Q  135 aagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggattttt 210  Q
    ||||||||| || | | |||||| ||||||||||||||||||||| | || |||| |||||||||  |||||||||    
T  41442046 aagctattttgtgtcacgaatactaaactcacccggcaaatgcttctccagaatcctccactcttcctggattttt 41441971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 41431496 - 41431446
Alignment:
Q  128 atattacaagctatttagtataaagaataccaaactcacccggcaaatgct 178  Q
    ||||||||||||||||||||| | |||||| |||||| || ||||||||||    
T  41431496 atattacaagctatttagtatcaggaatactaaactcgcctggcaaatgct 41431446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 82 - 506
Target Start/End: Complemental strand, 33363364 - 33362944
Alignment:
Q  82 aaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggcaaatgctttt 181  Q
    |||| |||||||||||||||  |||||| |  ||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||  |    
T  33363364 aaaattaaattgaatactaaatgtgataggcaatatgacattgaaaatattacaagctatttagtatcaggaatactaaactcacccggcaaatgctcct 33363265  T
Q  182 tcaaaatcttccactctttttggatttttctttctagcccaactt---gggttttgctgaggaaataagtgatatgtaaatccatataattaagatcaga 278  Q
     ||||||| |||||||||  ||||||||| |    |||||||||    || || |||| |||||||| || |||| |||||||||||||||||||| |||    
T  33363264 ccaaaatcctccactcttcctggattttttt----agcccaactcttcggattctgcttaggaaataggtaatatataaatccatataattaagattaga 33363169  T
Q  279 actgaca-aaagtacgtctgtaagagacattttgagaaaagnnnnnnnnnctaacctgcttcatggaggaattatttttactaaaataatggtctgaagt 377  Q
    ||||| | |||||||||||  || |    |||| | | |||         ||||||||||||| |||| ||||||||||| |||| ||||||||||||||    
T  33363168 actgaaacaaagtacgtcttcaatat---tttttatagaagacaaaaaa-ctaacctgcttcacggagcaattatttttaataaagtaatggtctgaagt 33363073  T
Q  378 gttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagtttcgttttcgggttcatcagtgattctcaaacccgctgtgtccacagctgct 477  Q
    || ||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||| | | |||||||  |   |||||||||||    
T  33363072 gtcagtaacagtgtcaaattgcttaaaacttcgaagtttcctcagggtttcattttcgggttcatgagtgactgtaaaacccgagggaaccacagctgct 33362973  T
Q  478 ccatcacttccgactctggcagatttgag 506  Q
    ||||||| |||  ||||||||||||||||    
T  33362972 ccatcacatccagctctggcagatttgag 33362944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 328 - 458
Target Start/End: Complemental strand, 33369541 - 33369411
Alignment:
Q  328 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 427  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| | |||||||    
T  33369541 ctaacctgcttcatggaggaattacttttattaaagtaatggtctgaggtgtcagtgacagtgtcaaattgcttaaaacttcgaagtttcctaagagttt 33369442  T
Q  428 cgttttcgggttcatcagtgattctcaaacc 458  Q
    | ||||||||||||||||||||| |||||||    
T  33369441 cattttcgggttcatcagtgattgtcaaacc 33369411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 33369842 - 33369667
Alignment:
Q  35 ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac 134  Q
    ||||||| |||||||||||||||||||||| |||||| | | ||| ||||||||||||| ||| |||  ||||| ||| ||||| ||| |||||||||||    
T  33369842 ttaacaacgattggatacaacccatatggttaagtccgtcagctcgaaaaagtaaattggatagtaaatgtgatctgtaatatggcatggaaaatattac 33369743  T
Q  135 aagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggattttt 210  Q
    ||||||||||| |  |||||||| |||||| ||||| |||||||  | |||||||||||||||||  |||||||||    
T  33369742 aagctatttagcaacaagaatactaaactcgcccggaaaatgctcctccaaaatcttccactcttcctggattttt 33369667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 43 - 281
Target Start/End: Original strand, 7763254 - 7763490
Alignment:
Q  43 gattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattacaagctatt 142  Q
    |||||||| ||||||||||||| |||||||| | || ||||| | |||||| ||||||   ||||| ||||||||||||| ||||||| |||||| ||||    
T  7763254 gattggatgcaacccatatggtaaagtccatcagctgaaaaa-gaaaattggatactacgtgtgatgtgtgatatgacatggaaaatagtacaagatatt 7763352  T
Q  143 tagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggatttttctttctagcccaa---cttgggttttgctgag 239  Q
    | |||| |||||||| | ||||||||||||||||||| | ||||||| |||||||||  ||||||    ||| ||||||||    |||| || |||| ||    
T  7763353 tcgtatcaagaatactagactcacccggcaaatgcttctccaaaatcctccactcttcctggatt----tttttagcccaattctttggattctgctcag 7763448  T
Q  240 gaaataagtgatatgtaaatccatataattaagatcagaact 281  Q
    |||||| || ||| ||||||||||||||| ||||||||||||    
T  7763449 gaaataggttataggtaaatccatataatcaagatcagaact 7763490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 7763517 - 7763635
Alignment:
Q  328 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 427  Q
    ||||| ||||||||||| ||||| |||||| || | | |||||||||| ||| | ||||| |||||||||||||||||||| |||||||| |||||||||    
T  7763517 ctaacatgcttcatggaagaattttttttaatatagtgatggtctgaaatgtcaatgacagtgtcaaattgcttaaaactttgaagtttcctcagagttt 7763616  T
Q  428 cgttttcgggttcatcagt 446  Q
    |  |||| |||| ||||||    
T  7763617 cactttctggtttatcagt 7763635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 328 - 457
Target Start/End: Complemental strand, 5373 - 5244
Alignment:
Q  328 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 427  Q
    |||||||||  ||||||||||| | ||||| |||| |||||||| ||||||| | ||| | ||||||||||||||||||||| ||||||  |||||||||    
T  5373 ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt 5274  T
Q  428 cgttttcgggttcatcagtgattctcaaac 457  Q
    | ||||||||||||||||||||| ||||||    
T  5273 cattttcgggttcatcagtgattgtcaaac 5244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 5580 - 5479
Alignment:
Q  109 atgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctttttggattt 208  Q
    |||||||||||||| ||||| ||| ||||| ||||||||  |||||| | ||||||||||||||  || || | |||||||||||||||||  |||||||    
T  5580 atgtgatatgacatggaaaaaatttcaagcaatttagtaacaagaatgctaaactcacccggcacgtgattctccaaaatcttccactcttcctggattt 5481  T
Q  209 tt 210  Q
    ||    
T  5480 tt 5479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 328 - 457
Target Start/End: Original strand, 18085 - 18214
Alignment:
Q  328 ctaacctgcttcatggaggaattatttttactaaaataatggtctgaagtgttagtgacaatgtcaaattgcttaaaacttcgaagtttcttcagagttt 427  Q
    |||||||||  ||||||||||| | ||||| |||| |||||||| ||||||| | ||| | ||||||||||||||||||||| ||||||  |||||||||    
T  18085 ctaacctgcgccatggaggaatgacttttaataaagtaatggtccgaagtgtcactgatagtgtcaaattgcttaaaacttccaagttttctcagagttt 18184  T
Q  428 cgttttcgggttcatcagtgattctcaaac 457  Q
    | ||||||||||||||||||||| ||||||    
T  18185 cattttcgggttcatcagtgattgtcaaac 18214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 13707 - 13758
Alignment:
Q  409 cgaagtttcttcagagtttcgttttcgggttcatcagtgattctcaaacccg 460  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  13707 cgaagtttcttcagagtttcattttcaggttcatcagtgattgtcaaacccg 13758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 17878 - 17968
Alignment:
Q  109 atgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggcaaatgctttttcaaaatcttccactctt 199  Q
    |||||||||||||| ||||| ||| ||||| ||||||||  |||||| | ||||||||||||||  || || | |||||||||||||||||    
T  17878 atgtgatatgacatggaaaaaatttcaagcaatttagtaacaagaatgctaaactcacccggcacgtgattctccaaaatcttccactctt 17968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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