View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5668_high_5 (Length: 513)

Name: NF5668_high_5
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5668_high_5
NF5668_high_5
[»] chr3 (21 HSPs)
chr3 (13-278)||(10520687-10520952)
chr3 (13-148)||(10667056-10667194)
chr3 (190-278)||(9842060-9842148)
chr3 (190-278)||(9853079-9853167)
chr3 (307-493)||(11771898-11772084)
chr3 (381-494)||(10091460-10091573)
chr3 (381-494)||(10198342-10198455)
chr3 (342-493)||(11779236-11779387)
chr3 (229-278)||(9980668-9980717)
chr3 (229-278)||(10035205-10035254)
chr3 (229-278)||(10263903-10263952)
chr3 (380-494)||(10583176-10583290)
chr3 (402-494)||(10263364-10263456)
chr3 (402-494)||(10520148-10520240)
chr3 (403-494)||(9841521-9841612)
chr3 (229-264)||(10130131-10130166)
chr3 (390-428)||(10373144-10373182)
chr3 (402-494)||(10666129-10666221)
chr3 (459-494)||(10034666-10034701)
chr3 (459-494)||(10129585-10129620)
chr3 (459-494)||(10431412-10431447)
[»] scaffold0083 (1 HSPs)
scaffold0083 (229-278)||(54420-54469)
[»] chr2 (1 HSPs)
chr2 (380-436)||(26909609-26909665)
[»] chr8 (1 HSPs)
chr8 (21-79)||(33076678-33076736)
[»] chr5 (1 HSPs)
chr5 (56-95)||(31804318-31804358)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 10520952 - 10520687
Alignment:
Q  13 aatatatgaacaattcacaaaaatagaaacaatatggaacattataaaaaatcttattttgaccttaaataaaaaatattgtggtatttttccttctaat 112  Q
    |||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10520952 aatatatgaacaatccgcaaaaatagaaaaaatattgaacattataaaaaatcttattttgaccttaaataaaaaatattgtggtattttttcttctaat 10520853  T
Q  113 tttacccccaacttaagtatttcttacaattttattgttctttgccgataaaaacggaaagactggagtgtccacgctatacaaaaagttgaattctgag 212  Q
    |||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10520852 tttacccctaatttaattatttcttccaattttattgttctttgccgataaaaacggaaagactggagtgtccacgctatacaaaaagttgaattctgag 10520753  T
Q  213 atatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10520752 atatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 10520687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 10667194 - 10667056
Alignment:
Q  13 aatatatgaacaattcacaaaaatagaaacaatatggaaca---ttataaaaaatcttattttgaccttaaataaaaaatattgtggtatttttccttct 109  Q
    ||||||||||| || | |||||||||||| ||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10667194 aatatatgaaccatccgcaaaaatagaaaaaatattgaacaacattataaaaaatcttattttgaccttaaataaaaaatattgtggtattttttcttct 10667095  T
Q  110 aattttacccccaacttaagtatttcttacaattttatt 148  Q
    | ||||||||| || |||| |||||||||||||||||||    
T  10667094 agttttacccctaatttaattatttcttacaattttatt 10667056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 9842148 - 9842060
Alignment:
Q  190 tatacaaaaagttgaattctgagatatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9842148 tatacaaaaaattgacttctgagatatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 9842060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 9853167 - 9853079
Alignment:
Q  190 tatacaaaaagttgaattctgagatatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9853167 tatacaaaaaattgaattttgagagatcattaaatctcatacagaggattgattattggctttctggtaggaactgtggaacatacctg 9853079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 11772084 - 11771898
Alignment:
Q  307 caagggagacgggcagtaacaactacttaatcagcgtggtgactatattatcatcctttccaattaccaatagtgaaagagtggttagatcttgaagacc 406  Q
    |||||||||  ||||| |||||||  || ||||  |||||||||||||||||||| |||||||| ||||||   |||||||||||| | | ||| |||||    
T  11772084 caagggagataggcagcaacaactctttcatcaaggtggtgactatattatcatcatttccaataaccaatttcgaaagagtggtttggttttggagacc 11771985  T
Q  407 ccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatga 493  Q
    |||||| ||||| || ||||||||| ||||||   || ||| ||        || ||||| ||||||||||||||||||||||||||    
T  11771984 ccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaagttgggaggtagacaaactccttcacaaaatga 11771898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 10091573 - 10091460
Alignment:
Q  381 gaaagagtggttagatcttgaagaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactc 480  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||   |||| | ||        |||||||| |||||||||||||    
T  10091573 gaaagagtggttagatcttggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactc 10091474  T
Q  481 cttcacaaaatgac 494  Q
    ||||||||||||||    
T  10091473 cttcacaaaatgac 10091460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 10198455 - 10198342
Alignment:
Q  381 gaaagagtggttagatcttgaagaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactc 480  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||   |||| | ||        |||||||| |||||||||||||    
T  10198455 gaaagagtggttagatcttggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactc 10198356  T
Q  481 cttcacaaaatgac 494  Q
    ||||||||||||||    
T  10198355 cttcacaaaatgac 10198342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 493
Target Start/End: Original strand, 11779236 - 11779387
Alignment:
Q  342 gtggtgactatattatcatcctttccaattaccaatagtgaaagagtggttagatcttgaagaccccattccgtaaccggcggtgttgttgtttgggtcc 441  Q
    |||||||||||||||||||| |||||||| |||| |  ||||||||||||| | | ||| ||||||||||| ||||| || ||||||||| ||||||       
T  11779236 gtggtgactatattatcatcatttccaataaccagttctgaaagagtggtttggttttggagaccccattctgtaactggtggtgttgttatttgggaaa 11779335  T
Q  442 aaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatga 493  Q
    || ||| ||        |||||||| ||||||||||||| ||||||||||||    
T  11779336 aactcacaattgattgtaatttgggaggtagacaaactctttcacaaaatga 11779387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 9980717 - 9980668
Alignment:
Q  229 tacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9980717 tacagatgattgattattggctttctggtaggaactgtggaacatacctg 9980668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 10035254 - 10035205
Alignment:
Q  229 tacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10035254 tacagatgattgattattggctttctggtaggaactgtggaacatacctg 10035205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 10263952 - 10263903
Alignment:
Q  229 tacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10263952 tacagatgattgattattggctttctggtaggaactgtggaacatacctg 10263903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 494
Target Start/End: Complemental strand, 10583290 - 10583176
Alignment:
Q  380 tgaaagagtggttagatcttgaagaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaact 479  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||| |||| |||||||  |||||| ||        |||||| | ||||||||||||    
T  10583290 tgaaagagctgttagatctttgagaccccattccgtaaccggcggtgctgttttttgggtaaaaatcacaattgatcgtaatttgagaggtagacaaact 10583191  T
Q  480 ccttcacaaaatgac 494  Q
    |||||| ||||||||    
T  10583190 ccttcagaaaatgac 10583176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 10263456 - 10263364
Alignment:
Q  402 agaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatgac 494  Q
    |||||||||||||||||||||||||||||| |||||||  |||||  ||        |||||||| |||||||||||||||||| ||||||||    
T  10263456 agaccccattccgtaaccggcggtgttgttttttgggtagaaatctcaattgattgtaatttgggaggtagacaaactccttcagaaaatgac 10263364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 10520240 - 10520148
Alignment:
Q  402 agaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatgac 494  Q
    ||||||||||||||||||||||||| |||| |||||||  |||||  ||        |||||||| |||||||||||||||||||||||||||    
T  10520240 agaccccattccgtaaccggcggtgctgttttttgggtagaaatcttaattgattgcaatttgggaggtagacaaactccttcacaaaatgac 10520148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 494
Target Start/End: Complemental strand, 9841612 - 9841521
Alignment:
Q  403 gaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatgac 494  Q
    |||||||||||||||||||||||| |||| |||||||  ||||   ||        |||||||| |||||||||||||||||||||||||||    
T  9841612 gaccccattccgtaaccggcggtgctgttttttgggtagaaatagcaattgattgtaatttgggaggtagacaaactccttcacaaaatgac 9841521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 10130166 - 10130131
Alignment:
Q  229 tacagaggattgattattggctttctggtaggaact 264  Q
    ||||||||||||||||||||||||||||||||||||    
T  10130166 tacagaggattgattattggctttctggtaggaact 10130131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 10373144 - 10373182
Alignment:
Q  390 gttagatcttgaagaccccattccgtaaccggcggtgtt 428  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10373144 gttagatcttggagaccccattccgtaaccggcggtgtt 10373182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 10666221 - 10666129
Alignment:
Q  402 agaccccattccgtaaccggcggtgttgttgtttgggtccaaatcagaannnnnnnnaatttgggcggtagacaaactccttcacaaaatgac 494  Q
    ||||||||||||||||||||||| ||| || |||| |   |||||| ||        |||||||| |||||||||||||||||||||||||||    
T  10666221 agaccccattccgtaaccggcggagttattctttgagatgaaatcacaattgtttgtaatttgggaggtagacaaactccttcacaaaatgac 10666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 10034701 - 10034666
Alignment:
Q  459 aatttgggcggtagacaaactccttcacaaaatgac 494  Q
    |||||||| |||||||||||||||||||||||||||    
T  10034701 aatttgggaggtagacaaactccttcacaaaatgac 10034666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 10129620 - 10129585
Alignment:
Q  459 aatttgggcggtagacaaactccttcacaaaatgac 494  Q
    |||||||| |||||||||||||||||||||||||||    
T  10129620 aatttgggaggtagacaaactccttcacaaaatgac 10129585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Original strand, 10431412 - 10431447
Alignment:
Q  459 aatttgggcggtagacaaactccttcacaaaatgac 494  Q
    |||||||| |||||||||||||||||||||||||||    
T  10431412 aatttgggaggtagacaaactccttcacaaaatgac 10431447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 54420 - 54469
Alignment:
Q  229 tacagaggattgattattggctttctggtaggaactgtggaacatacctg 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54420 tacagatgattgattattggctttctggtaggaactgtggaacatacctg 54469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 26909665 - 26909609
Alignment:
Q  380 tgaaagagtggttagatcttgaagaccccattccgtaaccggcggtgttgttgtttg 436  Q
    ||||||||||||||||||||| |||| |||||||||||| | |||||||||| ||||    
T  26909665 tgaaagagtggttagatcttggagacaccattccgtaacagacggtgttgttatttg 26909609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 33076678 - 33076736
Alignment:
Q  21 aacaattcacaaaaatagaaacaatatggaacattataaaaaatcttattttgacctta 79  Q
    |||||||||  ||||| |||||||||| | ||| |||||||||||||||||||| ||||    
T  33076678 aacaattcatgaaaattgaaacaatatcggacactataaaaaatcttattttgatctta 33076736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 31804318 - 31804358
Alignment:
Q  56 ataaaaaatcttattttgaccttaaataa-aaaatattgtg 95  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  31804318 ataaaaaatcttattttgaccttatataacaaaatattgtg 31804358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University