View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_low_19 (Length: 239)
Name: NF5668_low_19
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28958797 - 28958576
Alignment:
| Q |
1 |
tatgacgctaaaatattagaattataaattcctttatgatttatcacatttccattttattttttaagctcaccatgagctaaaattttatttaattagg |
100 |
Q |
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| T |
28958797 |
tatgacgctaaaagattagaattataaattcctttatgatttatcacatttccattttattttttaagctcaccatgagctaaaattttatttaattagg |
28958698 |
T |
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| Q |
101 |
agttaatgaggttttaattcaatcgatcaagttctcttttaaactaagttgttttaatgttaatatttaaaagttattttggccacttaagttttagtgc |
200 |
Q |
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| T |
28958697 |
agttaatgaggttttaattcaatcgatcaagttctcttttaaaccaagttgttttaatgttaatatttaaaagttattttggccacttaagttttagtgc |
28958598 |
T |
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| Q |
201 |
tcgtcttttgagcttagaaatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
28958597 |
tcgtcttttgagcttagaaatg |
28958576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 855497 - 855566
Alignment:
| Q |
146 |
aagttgttttaatgttaatatttaaaagttattttggccacttaagttttagtgctcgtcttttgagctt |
215 |
Q |
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||||||||||||||||||||| | || ||||||||| ||||||||||||| || | | ||||||||||| |
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| T |
855497 |
aagttgttttaatgttaatatctgaagcttattttggtcacttaagttttattgttagccttttgagctt |
855566 |
T |
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