View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5668_low_2 (Length: 603)
Name: NF5668_low_2
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 23 - 569
Target Start/End: Original strand, 18867247 - 18867785
Alignment:
| Q |
23 |
atactggacatggatcgaaaaatgtgttccttggtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggctttaagcgacctagattagt |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867247 |
atactggacatggatcgaaaaacgtgttccttggtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggctttaagcgacctagattagt |
18867346 |
T |
|
| Q |
123 |
gttggatggttgtaaattgagatataaagaagctttgcaattgatagagagtcatactcaagcactttttgagcataataaggaatgtggtttgaatgag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867347 |
gttggatggttgtaaattgagatataaagaagctttgcaactgatagagagtcatactcaagccctttttgagcataataaggaatgtggtttgaatgag |
18867446 |
T |
|
| Q |
223 |
tttgat---gatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgt |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867447 |
tttgatgatgatgatgaagaagatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgt |
18867546 |
T |
|
| Q |
320 |
ggatgacagaagatttcattgatggaatatataagcttgaagaacgtgaagccaagtgaaggaaacatgttggaaaatagactcgaacaattcctcctgc |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18867547 |
ggatggcagaagatttcattgatggaatatataagcttgaagaacgtgaagccaagtgaaggaaacatgttggaaaatagactcgaacaattcctcctgc |
18867646 |
T |
|
| Q |
420 |
atagtatattcctatgagtcgtatgactcgtatcatttcatcnnnnnnnnnnnnngaggagtcatttcttcttttattcgttcatttataaaccttttga |
519 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18867647 |
atagtatattcctatgag---------tcgtatcatttcatctttttatttttttgaggagtcatttcttcttttattcgttcatttatataccttttga |
18867737 |
T |
|
| Q |
520 |
taaaatattatatttatgtaccaacgagagtatttggatgggatggtatt |
569 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18867738 |
taaaatattatatttatgtaccaac--gagtatttggatgggatggtatt |
18867785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 241 - 409
Target Start/End: Original strand, 18888238 - 18888400
Alignment:
| Q |
241 |
gatgataggtttattgaagcttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcattg |
340 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||| |||| | |||||| | ||||||||||| | |
|
|
| T |
18888238 |
gatgataagtttattgaagcttcatttactattataaagagactactctaagaaggtcttgcttttggaactttcccatggatggccgaagatttcatcg |
18888337 |
T |
|
| Q |
341 |
atggaatatataagcttgaagaacgtgaagccaagtgaaggaaacatgttggaaaatagactcgaacaa |
409 |
Q |
| |
|
| ||||||| ||||||| | |||||| ||||||||| ||||||||| ||| |||| || ||||| |
|
|
| T |
18888338 |
-----acatataagtttgaagatcttgaagcaaagtgaagg-aacatgttgcaaagtagattcaaacaa |
18888400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 18881333 - 18881383
Alignment:
| Q |
56 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
106 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
18881333 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18881383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 18887979 - 18888029
Alignment:
| Q |
56 |
gtaagcaagaaattgaaaatggaactttgaaagattatgtaaagggcttta |
106 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
18887979 |
gtaagcaagaaaatgaaattggagatttgaaagattatataaagggcttta |
18888029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 3544930 - 3545011
Alignment:
| Q |
260 |
cttcattttctagtataaagagactactatgggaaggtcttgcttttggatcttttctgtggatgacagaagatttcattga |
341 |
Q |
| |
|
|||||||||||||| | ||||||||| | | ||||| | ||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
3544930 |
cttcattttctagtcttaagagactagtcttggaagctgttgcttttggatcttttctgtgggaaacagaagattacattga |
3545011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University