View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5668_low_22 (Length: 204)
Name: NF5668_low_22
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_22 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 7331929 - 7331758
Alignment:
| Q |
17 |
tataattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7331929 |
tataattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
7331830 |
T |
|
| Q |
117 |
tagttattcacaatcagaattgctcgggttctttttgtggtctggagctgctgaagatggggtgaaaagggt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7331829 |
tagttattcacaatcagaattgctcgggttctttttgtggtctggagctgctgaagatggggtgaaaagggt |
7331758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 2649171 - 2649025
Alignment:
| Q |
19 |
taattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaata |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2649171 |
taattttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagg |
2649072 |
T |
|
| Q |
119 |
gttattcacaatcagaattgctcgggttctttttgtggtctggagct |
165 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2649071 |
gttattcaaaatcagaattgctcgggttctttttgtggtctggagct |
2649025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 2641678 - 2641532
Alignment:
| Q |
19 |
taattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaata |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2641678 |
taattttaattgcaccttaagcctcaaagtactccttatgacgtaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagg |
2641579 |
T |
|
| Q |
119 |
gttattcacaatcagaattgctcgggttctttttgtggtctggagct |
165 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2641578 |
gttattcaaaatcagaattgcttgggttctttttgtggtctggagct |
2641532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 2504180 - 2504349
Alignment:
| Q |
19 |
taattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaata |
118 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| | |||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2504180 |
taattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctcttt--caggttggctgtgtttgtttgtttcaatagaagg |
2504277 |
T |
|
| Q |
119 |
gttattcacaatcagaattgctcgggttctttttgtggtctggagc--tgctgaagatggggtgaaaagggt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
2504278 |
gttattcacaatcagaattgctcgggttctttttgtggtgtggagctttgctgaagatggggtgaaaagggt |
2504349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 2495787 - 2495881
Alignment:
| Q |
21 |
attttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
116 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | |||||| | ||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
2495787 |
attttaattgcacctgaagcctcaaaatagact-tataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaa |
2495881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 2634209 - 2634314
Alignment:
| Q |
19 |
taattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaata |
118 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| | |||||| | |||||| ||||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
2634209 |
taatttttattgcacctcaagcctcaaaatagact-tataacatcatagttcaaatgtctctttttcaggctggttgtgtttgttcgtttcaatagaagg |
2634307 |
T |
|
| Q |
119 |
gttattc |
125 |
Q |
| |
|
||||||| |
|
|
| T |
2634308 |
gttattc |
2634314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 675124 - 675063
Alignment:
| Q |
55 |
tataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
116 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
675124 |
tataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaa |
675063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 749720 - 749659
Alignment:
| Q |
55 |
tataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa |
116 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
749720 |
tataacttcgtagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaa |
749659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 9564473 - 9564401
Alignment:
| Q |
55 |
tataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaatagttattcac |
127 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
9564473 |
tataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcac |
9564401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 2484 - 2554
Alignment:
| Q |
55 |
tataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaatagttattc |
125 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
2484 |
tataacgtcatagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattc |
2554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University