View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_low_3 (Length: 523)
Name: NF5668_low_3
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 43553052 - 43553547
Alignment:
| Q |
18 |
aattaaaacagccactaatacaatggtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttca |
117 |
Q |
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| T |
43553052 |
aattaaaacagccactaacacaatagtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttca |
43553151 |
T |
|
| Q |
118 |
atttttcctttgttatgatgatgcttttgtttcactaaatttgttggtgaaacgtagtacggattataggttccattctcaaatctctcacttgcttgag |
217 |
Q |
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| T |
43553152 |
atttttcctttgttatgatgatgcttttgtttcactaaatttgttggtgaaacgtagtacggattataggttccattctcaaatctctcacttgcttgag |
43553251 |
T |
|
| Q |
218 |
gctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaaccatttcagttagcacttccatttcattagggatata |
317 |
Q |
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| T |
43553252 |
gctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaaccatttcagttagcacttccatttcattagggatata |
43553351 |
T |
|
| Q |
318 |
ccttcgcgatggagaaagcctatatgctggtgagggagaattgttcttatctagttcaagtgaaaatgaggaagattggatgcttcttttaccaccagct |
417 |
Q |
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| T |
43553352 |
ccttcgcgatggagaaagtctatatgctggtgagggagaattgttcttatctagttcaagtgaaaatgaggaagattggatgcttcttttaccaccagct |
43553451 |
T |
|
| Q |
418 |
ctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtcaagtgctgtcatcccttcactattcctagtatta |
513 |
Q |
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| T |
43553452 |
ctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtcaagtgctgtcatcccttcactattcctagtatta |
43553547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 43549054 - 43549546
Alignment:
| Q |
18 |
aattaaaacagccactaatacaatggtgtttcttgcatttagtaatgcctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttca |
117 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549054 |
aattaaaacagccactaacacaatagtgtttcttgcatttagtaatgcctctttgtgcatctcatgatagtgtttcctcttagtatgattcacattttca |
43549153 |
T |
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| Q |
118 |
atttttcctttgttatgatgatgcttttgtttcactaaatttgttggtgaaacgtagtacggattataggttccattctcaaatctctcacttgcttgag |
217 |
Q |
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| T |
43549154 |
atttttcctttgttatgatggtgcttttgtttcactaaatttgttggcgagaagtagtatggattataggttccattctcaaatctctcacttacttgag |
43549253 |
T |
|
| Q |
218 |
gctgaggcgatcttgaatcggagcttttgctaactggtggagggcttatacaatcataagaaaccatttcagttagcacttccatttcattagggatata |
317 |
Q |
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||||||| ||| | || || | ||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || | ||||| |
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| T |
43549254 |
gctgaggtgatatagattcagtgctttcgctaactggtggagggcttatacagtcataagaaaccatttcagtcagcacttccatttccttcgatatata |
43549353 |
T |
|
| Q |
318 |
ccttcgcgatggagaaagcctatatgctggtgagggagaattgttcttatctagttcaagtgaaaatgaggaagattggatgcttcttttaccaccagct |
417 |
Q |
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|||||| || |||| ||||| ||| ||||||||||||| || | || ||||||||||||||||| || |||| | ||||||||||||| ||| || |
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| T |
43549354 |
ccttcgtgacaaagaatgcctagatgttggtgagggagaactggtgttgtctagttcaagtgaaaaaga---agatggtgtgcttcttttacctccatct |
43549450 |
T |
|
| Q |
418 |
ctgataaatatggcttgtagttgcctactttctacgctgtccatagcctgatcaagaatgtcaagtgctgtcatcccttcactattcctagtatta |
513 |
Q |
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||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||| ||||| ||||| | ||||||| |||||||||||||| |
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| T |
43549451 |
ctgataaatatggcttgtagttgtctattttcggcattgtccatagcctgatcaagaatatcaagagctgtgagcccttcattattcctagtatta |
43549546 |
T |
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