View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_low_6 (Length: 498)
Name: NF5668_low_6
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Complemental strand, 37012561 - 37012066
Alignment:
| Q |
7 |
aattttccttgctttgttgcatttctatgtgagtcatggtttaccatcacttggattacaaccatgagcaccaaatggactcctgcacatgccaaaacct |
106 |
Q |
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| T |
37012561 |
aatttttcttgctttgttgcatttctatgtgagtcatggtttaccatcacttggattacaaccatgagcaccaaatggactcctgcacataccaaaacct |
37012462 |
T |
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| Q |
107 |
tcctagatcgtctcttgcttaggtaagtatatacatctccatatactttgctagactcccctcaaatcaaaatactacaaatccaacaatgattaattgc |
206 |
Q |
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| T |
37012461 |
tcctagatcgtctcttgcttaggtaagtttatacatctctatatactttgctagact--cctcaaatcaaaatactacaaatccaacaatgcttaattgc |
37012364 |
T |
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| Q |
207 |
atattatctatttgcatgcattcacgtagtcaatacatcagttgttattgaatcgggatcactgtccaaattttaatgcatattttga------tctttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| | |||| |
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| T |
37012363 |
atattatctatttgcatgcattcacgtagtcaatacatcggtggttattgaatcgggatcattgtccaaattttaatgcatattttgatttatttttttt |
37012264 |
T |
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| Q |
301 |
ttaaatgtgaaatattgaccttgcgatatgaatcgtgtgatctaaatttaaatttcatcgttgtgttgactatgtgaatgcatgcaaatagtgacaacaa |
400 |
Q |
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| T |
37012263 |
ttaaatctgaaatattgaccttgaaatatgaatcgtgtgatctcaatttaactttcatcgttgtgttgactatgtgaatgcatgcaaatagtgacaacaa |
37012164 |
T |
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| Q |
401 |
ataatcagaatttattagttattatactaatannnnnnnctttattcgaattttatcctaggttctttaacgtttttaacccttatctctaatcgatt |
498 |
Q |
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| T |
37012163 |
ataatcagaatttattagttattatactaatatttttttctttatccaaattttaacatcggttctttaacgcttttaactcttatctcaaatcgatt |
37012066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 37028434 - 37028323
Alignment:
| Q |
20 |
ttgttgcatttctatgtgagtcatggtttaccatcacttggattacaaccatgagcaccaaatggactcctgcacatgccaaaaccttcctagatcgtct |
119 |
Q |
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||||||||||||| |||||||||||||| ||| ||| |||| || ||||||||||||||||||||||||||| || ||| |||| |||||| ||||| |
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| T |
37028434 |
ttgttgcatttctttgtgagtcatggttcaccttcatttgggttgtcaccatgagcaccaaatggactcctgcatataccataacccacctagaccgtct |
37028335 |
T |
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| Q |
120 |
cttgcttaggta |
131 |
Q |
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|||||||||||| |
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| T |
37028334 |
cttgcttaggta |
37028323 |
T |
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