View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_low_7 (Length: 359)
Name: NF5668_low_7
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 32396988 - 32396658
Alignment:
| Q |
29 |
aaaactttctgtagtataaggcaacaacaaaagaatgggaaaagagagcaccaactttatgacttgctacttaaagcattgtatatgttggtggagattg |
128 |
Q |
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| T |
32396988 |
aaaactttctgtagtataaagcaacaacaaaagaatgggaaaagagagcaccaactttatgacttgctacttaaagcattgtatatgttggtggagattg |
32396889 |
T |
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| Q |
129 |
caattacacttgttactacagctaatataatcataaccagtgctataattttgtcctgtcttgttgatatgccaagagcatccctgtcattggaaacaaa |
228 |
Q |
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| T |
32396888 |
caattacacttgtcactacagctaatataatcataaccagtgctataattttgtcctgtcttgttgatatgccaagagcatccctgtcattggaaacaaa |
32396789 |
T |
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| Q |
229 |
gaaaatttaggagcctggctttattcattcatgatttcatccctttattctgtttccaatttgtcacctttaataggataataattaagacgattatgaa |
328 |
Q |
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| T |
32396788 |
gaaaatttaggagcctggctttattcattcatgatttcattcctttattctgtttccaatttgtcacctttaataggataataattaagaagattatgaa |
32396689 |
T |
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| Q |
329 |
ataagaaatgttaccttaaaacaatagtgcc |
359 |
Q |
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| T |
32396688 |
agaagaaatgttaccttaaaacaatagtgcc |
32396658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 36140207 - 36140102
Alignment:
| Q |
110 |
tatatgttggtggagattgcaattacacttgttactacagctaatataatcataaccagtgctataattttgtcctgtcttgttgatatgccaagagcat |
209 |
Q |
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| T |
36140207 |
tatatgttgttggagatagcaatcacacttgttactagagctagtataaccatagccagtgctataatcttgtcttttcttgttgatataccatgaatat |
36140108 |
T |
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| Q |
210 |
ccctgt |
215 |
Q |
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|||||| |
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| T |
36140107 |
ccctgt |
36140102 |
T |
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