View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5668_low_8 (Length: 357)
Name: NF5668_low_8
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 28959245 - 28958904
Alignment:
| Q |
16 |
tttcttcatgagatgttcttgcaacattggaagcctcttgccaagtaaatgatgtttccacgtggtaaaaaattcaacgaattctatgtctcttaattaa |
115 |
Q |
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| T |
28959245 |
tttcttaatgagatgttattgaaacattggaagcctcttgacaagtaaatgatggttccacgtggtaaaaaattcaacgaattctatgtatcttaattaa |
28959146 |
T |
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| Q |
116 |
gaagaatatttacgaagtgtttggactgtagcacatagaatctcaaactgcatttgttgcaattatcttcttggaacccaatttcaatttgaactaaatc |
215 |
Q |
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| T |
28959145 |
gaagaatatttacgaattgtttggactgtaacacatagaatctcaaactgcatttgttgcaattatcttcttggaacccaatttcaatttgaactaaatc |
28959046 |
T |
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| Q |
216 |
aagaacactaccacacaatgttggatacaaattcatgtaatacactttctaaaagtctaaagcaaccaaatgaaccaatactacaattgttgtcttcgtt |
315 |
Q |
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| T |
28959045 |
aagaacactaccacacaatgttggatacaaattcatgaaatacactttctaaaagtctaaagcaaccaaatgaaccaatactacaattgttgtcttcgtt |
28958946 |
T |
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| Q |
316 |
ggtgaatctgaatattgaggcctgagggtgctaggaatttac |
357 |
Q |
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| T |
28958945 |
ggtgaatctgtatattgaggcctgagggtgctaggaatttac |
28958904 |
T |
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