View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5668_low_9 (Length: 355)
Name: NF5668_low_9
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5668_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 1413721 - 1414042
Alignment:
| Q |
16 |
attaaggaccaaaatcttaaatgagacaaaataaaaggattaaagttgtattaagccattaaaataaaagggtaaggagtgagaacctagtataattgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1413721 |
attaaggaccaaaatcttaaatgagacaaaataaaaggattaaagttgtattaagccattaaaataaaagggtaaggagtgagaacctagtataattgga |
1413820 |
T |
|
| Q |
116 |
acctcagcatgaggtttaggaaagggataagtgtgtccatgtttgggataaatgatgacagccccatgaactgtagctcttgcccaaccattatgtgcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1413821 |
acctcagcatgaggtttaggaaagggataagtgtgtccatgtttgggataaatgatgacagccccatgaactgtagctcttgcccaaccattatgtgcat |
1413920 |
T |
|
| Q |
216 |
gccaccatattgttccttcttctgtggtcaaatgtataatttgtttgaacatatttcctgatttaattgggcattgtgttatgtattcaggtccatctga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1413921 |
gccaccatattgttccttcttctgtggtcaaatgtataatttgtttgaacatatttcctgatttaattgggcattgtgttatgtattcaggtccatctga |
1414020 |
T |
|
| Q |
316 |
ccatggattcctcacttgtctt |
337 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1414021 |
ccatggattcctcacttgtctt |
1414042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 23985948 - 23985915
Alignment:
| Q |
287 |
cattgtgttatgtattcaggtccatctgaccatg |
320 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
23985948 |
cattgtgttatatattcaggtccatctgaccatg |
23985915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University