View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5669-Insertion-2 (Length: 815)

Name: NF5669-Insertion-2
Description: NF5669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5669-Insertion-2
NF5669-Insertion-2
[»] chr1 (2 HSPs)
chr1 (7-734)||(3152732-3153442)
chr1 (755-815)||(3153428-3153488)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 7 - 734
Target Start/End: Original strand, 3152732 - 3153442
Alignment:
Q  7 agtttcaacaagtttcatagctttcgctgctttgaagaagtgattaatggtttataattaatggtttatatggacactatttcatcaaatggttgtttta 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  3152732 agtttcaacaagattcatagctttcgctgctttgaagaagtgattaatggtttata--------------tggacactatttcatcaaatggttgtttta 3152817  T
Q  107 tctatttaggaacatgatatatttatgtcattggttttattttcatttcgcctttcaatattaaaatttaaaaatcgattatccgttttgtttcacattg 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3152818 tctatttaggaacatgatatatttatgtcattgattttattttcatttcgcctttcaatattaaaatttaaaaatcgattatctgttttgtttcacattg 3152917  T
Q  207 atcttgtctaaattttcttattgttttaatccgtattcaagatacatgactatgaaattctgaaagtgatgaagacctcaatgccaaagaacttaaagct 306  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3152918 atcttgtctaaattttctcattgttttaatccgtattcaagatacattactctgaaattctgaaagtgatgaagacctcaatgccaaagaacttaaagct 3153017  T
Q  307 tagtgtgttgacatttcctttggttatttgtgcaatcatcgttaattctagttgagaataagtcttgtcnnnnnnnnnnngttgagaataagttaattca 406  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||           ||||||||||||||||||||    
T  3153018 tagtgtgttcacatttcctttggttatttgtgcaatcatcgttaattatagttgagaataagtcttgtcaaaaaaaaaaagttgagaataagttaattca 3153117  T
Q  407 caaaatgggttgaagttgaactagtagccaagaaaaataatatagtgagtatgtaaatttaattggaagaagattgtttacaaattctgactccctcaat 506  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3153118 caaaatgggttgaagttgaa---gtagccaagaaaaataatatagtgagtatgtaaatttaattggaagaagattgtttacaaattcagactccctcaat 3153214  T
Q  507 atattgtgttagatgttggctaatagtttatcaatttggttctcgaagagttctgcgaaaacttagtcattcaaaatagttgtctcaatggaagtggatg 606  Q
    ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3153215 atattgtgttagatgttggctcatagtttaccaatttggttgtcgaagagttctgcgaaaacttagtcattcaaaatagttgtctcaatggaagtggatg 3153314  T
Q  607 gtccagcataatatgccaataaagttatcctatcatgcctgaagaagaagctcgacgaagcaaaaggatggtgggcaaaatatttatattgggtattatg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3153315 gtccagcataatatgccaataaagttatcctatcatgcctgaagaagaagctcgatgaagcaaaaggatggtgggcaaaatatttatattgggtattatg 3153414  T
Q  707 gtcttaccacacgagtagatggggaacc 734  Q
    ||||||||||||||||||||||||||||    
T  3153415 gtcttaccacacgagtagatggggaacc 3153442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 755 - 815
Target Start/End: Original strand, 3153428 - 3153488
Alignment:
Q  755 agtagatgggaaaccgatgtcccgtgaggtcatcaaacataacctcaagcatttttcacca 815  Q
    |||||||||| |||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  3153428 agtagatggggaaccgatgtcctccgaggtcatcaaacataacctcgagcatttttcacca 3153488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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