View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5669-Insertion-3 (Length: 206)

Name: NF5669-Insertion-3
Description: NF5669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5669-Insertion-3
NF5669-Insertion-3
[»] chr7 (8 HSPs)
chr7 (18-100)||(26282718-26282801)
chr7 (18-93)||(1365821-1365897)
chr7 (18-94)||(40001872-40001948)
chr7 (57-101)||(2263924-2263968)
chr7 (69-100)||(44877038-44877069)
chr7 (67-100)||(4099741-4099774)
chr7 (67-100)||(11672389-11672422)
chr7 (60-100)||(32956399-32956439)
[»] chr5 (6 HSPs)
chr5 (29-100)||(43511423-43511494)
chr5 (18-100)||(20975789-20975871)
chr5 (18-102)||(10591447-10591531)
chr5 (18-100)||(4734757-4734840)
chr5 (29-100)||(29155994-29156065)
chr5 (18-92)||(42292057-42292131)
[»] chr2 (8 HSPs)
chr2 (18-100)||(15457306-15457388)
chr2 (18-99)||(18173115-18173197)
chr2 (58-100)||(21747920-21747962)
chr2 (58-99)||(38985915-38985956)
chr2 (57-100)||(17117853-17117896)
chr2 (67-101)||(13020209-13020243)
chr2 (62-100)||(18916275-18916313)
chr2 (58-100)||(42411791-42411833)
[»] chr8 (5 HSPs)
chr8 (29-102)||(34524139-34524212)
chr8 (64-101)||(43926563-43926600)
chr8 (64-100)||(18111603-18111639)
chr8 (66-100)||(27074374-27074408)
chr8 (58-100)||(44665275-44665317)
[»] chr6 (7 HSPs)
chr6 (18-100)||(5877018-5877100)
chr6 (18-100)||(29308643-29308726)
chr6 (58-101)||(3515085-3515128)
chr6 (57-100)||(31860806-31860849)
chr6 (18-100)||(1690809-1690893)
chr6 (64-101)||(29400928-29400965)
chr6 (64-96)||(6360554-6360586)
[»] chr4 (3 HSPs)
chr4 (57-107)||(45172860-45172910)
chr4 (29-100)||(34982029-34982100)
chr4 (67-100)||(29221866-29221899)
[»] chr3 (4 HSPs)
chr3 (18-100)||(48627205-48627288)
chr3 (20-100)||(43906007-43906085)
chr3 (58-101)||(23067959-23068002)
chr3 (58-100)||(8363960-8364002)
[»] chr1 (4 HSPs)
chr1 (18-96)||(12971214-12971293)
chr1 (58-101)||(6150493-6150536)
chr1 (58-100)||(18128173-18128215)
chr1 (64-100)||(33124872-33124908)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 26282718 - 26282801
Alignment:
Q  18 attagagttaatttt-tctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||| ||||||| ||||||||| || ||  |||||||||||||| ||||||||||||||||||||||||||||    
T  26282718 attagagttaattttttctgaggcctatagcttttggaggcccggcttgattgagtaccttgcactccctcaaggccgggcctg 26282801  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 1365897 - 1365821
Alignment:
Q  18 attagagttaattttt-ctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggcc 93  Q
    |||||||||||||||| | |||| | |||| || || ||  ||||||||||||||||||||||||||||||||||||    
T  1365897 attagagttaattttttcggaggcccatagattttggaggcccggcttgattgagcaccttgcactccctcaaggcc 1365821  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 40001872 - 40001948
Alignment:
Q  18 attagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccg 94  Q
    |||||||||||||||| | ||| | ||||||| || ||  ||||||| |||||||||||||||||| ||||||||||    
T  40001872 attagagttaattttttttaggcccatagcttttggaggcccggcttaattgagcaccttgcactctctcaaggccg 40001948  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 2263968 - 2263924
Alignment:
Q  57 tccggcttgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||    
T  2263968 tccggcttaattgagcaccttgcactctctcaaggccgggtctgg 2263924  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 100
Target Start/End: Original strand, 44877038 - 44877069
Alignment:
Q  69 gagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||||||||||||||||||    
T  44877038 gagcaccttgcactccctcaaggccgggcctg 44877069  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 4099774 - 4099741
Alignment:
Q  67 ttgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||| ||||||||||||||||||    
T  4099774 ttgagcaccttgcacaccctcaaggccgggcctg 4099741  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 11672422 - 11672389
Alignment:
Q  67 ttgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||| ||||||||||||||||||    
T  11672422 ttgagcaccttgcacaccctcaaggccgggcctg 11672389  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 32956439 - 32956399
Alignment:
Q  60 ggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||| ||||| ||| ||||||||||||||||||||||||    
T  32956439 ggcttggttgagtaccatgcactccctcaaggccgggcctg 32956399  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43511494 - 43511423
Alignment:
Q  29 tttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||| | ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  43511494 tttttctgaggcccatagcttttggaggtccggcttgattgagcaccttgcactccctcaaggccgggcctg 43511423  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 20975871 - 20975789
Alignment:
Q  18 attagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||||| | ||||||| || ||  |||||||||||||||||||||||||||||||| | ||||||||    
T  20975871 attagagttaatttttctgaggcccatagcttttggaggcccggcttgattgagcaccttgcactccctcaaagtcgggcctg 20975789  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 10591447 - 10591531
Alignment:
Q  18 attagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctggc 102  Q
    ||||||||| |||||||| | | | ||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  10591447 attagagttgatttttctaaagcccatagcttttggaggcccggcttgattgagcaccttgcactccctcaaggccgggcctggc 10591531  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 4734757 - 4734840
Alignment:
Q  18 attagagttaatttttc-tgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||  ||||| | ||||||| || ||  ||||||||||||||||  |||||||||||||||||||||||||    
T  4734757 attagagttaattttttatgaggcccatagcttttggaggcccggcttgattgagcattttgcactccctcaaggccgggcctg 4734840  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 29156065 - 29155994
Alignment:
Q  29 tttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||| ||| ||| || || ||||| ||||||||||| |||||||||||||||| |||| ||||    
T  29156065 tttttctgaggtccataacttttggaggtccggtttgattgagcatcttgcactccctcaagaccggacctg 29155994  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 42292057 - 42292131
Alignment:
Q  18 attagagttaattttt-ctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggc 92  Q
    |||||||||||||||| |||||| ||||||||| || ||  ||||||  |||||||||||||||||||||||||||    
T  42292057 attagagttaattttttctgaggcctatagcttttggaggcccggcta-attgagcaccttgcactccctcaaggc 42292131  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 15457388 - 15457306
Alignment:
Q  18 attagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||||| | ||| ||| || ||  |||||||||||||||||||||||||| ||||||||||||||||    
T  15457388 attagagttaatttttctgaggcccataacttttggaggcccggcttgattgagcaccttgcactctctcaaggccgggcctg 15457306  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 18173115 - 18173197
Alignment:
Q  18 attagagttaatttt-tctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcct 99  Q
    ||||||||||||||| ||||||||| ||||||  || ||  |||||||||||||||||||||||||||||||| |||||||||    
T  18173115 attagagttaattttttctgaggtccatagctcttggaggcccggcttgattgagcaccttgcactccctcaaagccgggcct 18173197  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 21747920 - 21747962
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21747920 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 21747962  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 38985915 - 38985956
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcct 99  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  38985915 ccggcttgattgagcaccttgcactctctcaaggccgggcct 38985956  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 17117853 - 17117896
Alignment:
Q  57 tccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  17117853 tccggcttgattgagcaccttacacttcctcaaggccgggcctg 17117896  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 13020243 - 13020209
Alignment:
Q  67 ttgagcaccttgcactccctcaaggccgggcctgg 101  Q
    ||||||||||||||| |||||||||||||||||||    
T  13020243 ttgagcaccttgcacaccctcaaggccgggcctgg 13020209  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 18916275 - 18916313
Alignment:
Q  62 cttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  18916275 cttgattgagcaccttgcacttcctcaaggacgggcctg 18916313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 42411791 - 42411833
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||    
T  42411791 ccggcctgattgagcaccttgcacaccctcaatgccgggcctg 42411833  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 34524139 - 34524212
Alignment:
Q  29 tttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctggc 102  Q
    ||||||||||| |  |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  34524139 tttttctgaggcccgtagcttttggaggtccggcttgattgagcaccttgcactccctcaaggccgggcctggc 34524212  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 43926563 - 43926600
Alignment:
Q  64 tgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43926563 tgattgagcaccttgcacaccctcaaggccgggcctgg 43926600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 18111639 - 18111603
Alignment:
Q  64 tgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18111639 tgattgagcaccttgcacaccctcaaggccgggcctg 18111603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 27074408 - 27074374
Alignment:
Q  66 attgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||| ||||||||||||||||||||||||||    
T  27074408 attgagcatcttgcactccctcaaggccgggcctg 27074374  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 44665275 - 44665317
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  44665275 ccggcttgattgagcaccttacacaccctcaaggtcgggcctg 44665317  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 5877018 - 5877100
Alignment:
Q  18 attagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||||| | ||||||  || ||  ||| |||||||||||||||||||||||| ||||| ||||||||    
T  5877018 attagagttaatttttctgaggcccatagctcttggaggcccgacttgattgagcaccttgcactcccccaaggtcgggcctg 5877100  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 29308643 - 29308726
Alignment:
Q  18 attagagttaattttt-ctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||| | || | ||||| ||| || ||  ||| |||||||||||||||||||||||||||||||||||||||    
T  29308643 attagagttaattttttcggaagcctataacttctggaggcccgacttgattgagcaccttgcactccctcaaggccgggcctg 29308726  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 3515085 - 3515128
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  3515085 ccggcttggttgagcaccttgcacaccctcaaggccgggcctgg 3515128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 31860849 - 31860806
Alignment:
Q  57 tccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  31860849 tccggcttgattgagcaccttgcattccctcaaggtcgggcctg 31860806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 1690809 - 1690893
Alignment:
Q  18 attagagttaatttt--tctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||  ||||||| | ||||||| || ||   ||||||||||||||| |||||||||||| |||| ||||||||    
T  1690809 attagagttaatttttttctgaggcccatagcttttggaggctcggcttgattgagcatcttgcactcccttaaggtcgggcctg 1690893  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 29400965 - 29400928
Alignment:
Q  64 tgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  29400965 tgattgagcaccttgcacaccctcaagcccgggcctgg 29400928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 6360586 - 6360554
Alignment:
Q  64 tgattgagcaccttgcactccctcaaggccggg 96  Q
    |||||||||||||||||| ||||||||||||||    
T  6360586 tgattgagcaccttgcacaccctcaaggccggg 6360554  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 45172860 - 45172910
Alignment:
Q  57 tccggcttgattgagcaccttgcactccctcaaggccgggcctggcggtat 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  45172860 tccggcttgattgagcaccttgcactccctcaaggccggacctggctgtat 45172910  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 34982100 - 34982029
Alignment:
Q  29 tttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||| | ||||||| || ||  ||||||||||||||||| |||||||||||||||| ||||||||    
T  34982100 tttttctgaggcccatagcttttggaggcccggcttgattgagcacattgcactccctcaaggtcgggcctg 34982029  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 29221866 - 29221899
Alignment:
Q  67 ttgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||||| ||||||||||||||    
T  29221866 ttgagcaccttgcactcccacaaggccgggcctg 29221899  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 48627205 - 48627288
Alignment:
Q  18 attagagttaatttttc-tgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||||||||||||||  ||||| | ||||||| || ||  |||||||||||||||||||||||| ||||||||| ||||||||    
T  48627205 attagagttaattttttatgaggcccatagcttttggaggcccggcttgattgagcaccttgcaccccctcaaggtcgggcctg 48627288  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 43906007 - 43906085
Alignment:
Q  20 tagagttaatttttctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||| | || || ||||||| || || |||| |||||||||||||||||||||||||||| ||||||||||    
T  43906007 tagagttaatttttttaagctc-atagcttttggaggtccgacttgattgagcaccttgcactccctcaa-gccgggcctg 43906085  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 23067959 - 23068002
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
T  23067959 ccggcctggttgagcaccttgcacaccctcaaggccgggcctgg 23068002  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 8364002 - 8363960
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||| || ||||||||||||||| ||||||||||||||||||    
T  8364002 ccggcctggttgagcaccttgcacaccctcaaggccgggcctg 8363960  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 12971293 - 12971214
Alignment:
Q  18 attagagttaattttt-ctgaggtctatagcttatgaagttccggcttgattgagcaccttgcactccctcaaggccggg 96  Q
    |||||||||||||||| |||||| | || |||  || ||  |||||||||||||||||||||||||||||||||| ||||    
T  12971293 attagagttaattttttctgaggcccattgctcttggaggcccggcttgattgagcaccttgcactccctcaaggtcggg 12971214  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 6150536 - 6150493
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctgg 101  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||    
T  6150536 ccggcctgattgagcaccttgcacaccctcaaggtcgggcctgg 6150493  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 18128173 - 18128215
Alignment:
Q  58 ccggcttgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    ||||| || ||||||||||||||| ||||||||||||||||||    
T  18128173 ccggcctggttgagcaccttgcacaccctcaaggccgggcctg 18128215  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 33124872 - 33124908
Alignment:
Q  64 tgattgagcaccttgcactccctcaaggccgggcctg 100  Q
    |||||||||||||||||| |||||||||| |||||||    
T  33124872 tgattgagcaccttgcacaccctcaaggcagggcctg 33124908  T

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