View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5669_low_1 (Length: 493)

Name: NF5669_low_1
Description: NF5669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5669_low_1
NF5669_low_1
[»] chr1 (2 HSPs)
chr1 (18-482)||(47192678-47193141)
chr1 (159-198)||(3288021-3288060)
[»] chr8 (4 HSPs)
chr8 (18-199)||(16659766-16659948)
chr8 (18-125)||(1668972-1669081)
chr8 (18-125)||(22015780-22015889)
chr8 (18-125)||(38520369-38520478)
[»] chr4 (5 HSPs)
chr4 (18-125)||(45144885-45144994)
chr4 (18-125)||(23217363-23217472)
chr4 (51-125)||(21356045-21356119)
chr4 (159-208)||(9816461-9816510)
chr4 (159-202)||(29947676-29947720)
[»] scaffold0393 (1 HSPs)
scaffold0393 (18-198)||(10626-10807)
[»] chr2 (2 HSPs)
chr2 (18-198)||(3934365-3934546)
chr2 (18-201)||(38974740-38974924)
[»] chr3 (4 HSPs)
chr3 (18-125)||(2337959-2338068)
chr3 (19-125)||(21240003-21240111)
chr3 (18-125)||(52894116-52894224)
chr3 (18-82)||(12707387-12707451)
[»] chr5 (3 HSPs)
chr5 (18-125)||(3175110-3175219)
chr5 (164-200)||(3175257-3175293)
chr5 (159-199)||(15302580-15302620)
[»] chr6 (1 HSPs)
chr6 (159-202)||(6807397-6807440)
[»] chr7 (2 HSPs)
chr7 (159-198)||(8363953-8363992)
chr7 (159-202)||(38871468-38871511)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 47192678 - 47193141
Alignment:
Q  18 tatgcttgctctatgctagtatacttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggcacc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  47192678 tatgcttgctctatgctagtatacttcggccttattgtttgatgtcatcgttagttttgggttttctcgttgtattggtgttacgtatataggcggcacc 47192777  T
Q  118 tctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctggctccgccactggttaaaggatcgttgattg 217  Q
    ||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||    
T  47192778 tctttgtatttttt-ccggtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctgactccgccactggttaaaggatcactgattg 47192876  T
Q  218 cttaatttagcggcaaataaaaatgtttatgtgaaggatatgatgtctagtagtggtttggtaggaggaggatgaagttgaagaagaagtttgtctgttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  47192877 cttaatttagcggcaaataaaaatgtttatgtgaaggatatgatgtctagtagtggtttggtaggaggagaatgaagttgaagaagacgtttgtctgttt 47192976  T
Q  318 aggaggaagagttagtaaaggagtgtaagattttactttctaatacttctttgaaggataatggcagatgacatttgaatttgagatcttaatcccggtg 417  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47192977 aggaggaagagttagtaaaggagtgtaaggtgttactttctaatacttctttgaaggataatggcagatgacatttgaatttgagatcttaatcccggtg 47193076  T
Q  418 gtatgttttcatccaaagaatcttacatgttgatatctaattttgaagtaatatcatatccccct 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47193077 gtatgttttcatccaaagaatcttacatgttgatatctaattttgaagtaatatcatattcccct 47193141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 3288060 - 3288021
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactg 198  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  3288060 tggcggccaccccaaacttttttgtctggctccgccactg 3288021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 16659766 - 16659948
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||| |||| || ||||||||||||||| ||| |||||    
T  16659766 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggtttcctcggtgaattggtgttacgtatttaggcggca 16659865  T
Q  116 cctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctggctccgccactgg 199  Q
    ||||||||||       ||||||| |||||  | ||||| |  | || ||||||| || |||||||||||||||||||||||||    
T  16659866 cctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccaccccaaacttttttgtctggctccgccactgg 16659948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 1668972 - 1669081
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||||  | ||||||||||||||| ||| |||||    
T  1668972 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggggaattggtgttacgtatttaggcggca 1669071  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  1669072 cctctttgta 1669081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 22015780 - 22015889
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| |||   |||    
T  22015780 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggtagca 22015879  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  22015880 cctctttgta 22015889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 38520478 - 38520369
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||||  | |||||||||| |||| ||| |||||    
T  38520478 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggggaattggtgttatgtatttaggcggca 38520379  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  38520378 cctctttgta 38520369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 45144885 - 45144994
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| |||||    
T  45144885 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggcggca 45144984  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  45144985 cctctttgta 45144994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 23217472 - 23217363
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||||  | ||||||||||||||| ||| |||||    
T  23217472 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggggaattggtgttacgtatttaggcggca 23217373  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  23217372 cctctttgta 23217363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 21356045 - 21356119
Alignment:
Q  51 attgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggcacctctttgta 125  Q
    ||||||||||| ||| |||||||||||||||||||| || |||||||||| |||| ||| |||||||||||||||    
T  21356045 attgtttgatgccattgttggttttgggttttctcggtgaattggtgttaagtatttaggcggcacctctttgta 21356119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 9816461 - 9816510
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactggttaaaggat 208  Q
    |||||| ||||| || |||||||||||||||||||||||| | |||||||    
T  9816461 tggcggtcaccccaaacttttttgtctggctccgccactgctcaaaggat 9816510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 29947676 - 29947720
Alignment:
Q  159 tggcggccacccgaagctttt-ttgtctggctccgccactggtta 202  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  29947676 tggcggccaccccaaactttttttgtctggctccgccactggtta 29947720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 10807 - 10626
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| ||| |    
T  10807 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggcggaa 10708  T
Q  116 cctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctggctccgccactg 198  Q
    ||||||||||       ||||||| |||||  | ||||| |  | || ||||||| || ||||||||||||||||||||||||    
T  10707 cctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccaccccaaacttttttgtctggctccgccactg 10626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 3934546 - 3934365
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||| |||||||| || ||||||||||||||| ||| |||||    
T  3934546 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttggtttttctcggtgaattggtgttacgtatttaggcggca 3934447  T
Q  116 cctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctggctccgccactg 198  Q
    ||||||||||       ||||||| |||||  | ||||| |  | || ||||||| || ||||||||||||||||||||||||    
T  3934446 cctctttgta-ttttttcccgttttttccgcaagtttttttaatagcagccaccccaaacttttttgtctggctccgccactg 3934365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 38974924 - 38974740
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    ||||||| |||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||| ||| ||| |||||    
T  38974924 tatgcttactctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacatatttaggcggca 38974825  T
Q  116 cctctttgtannnnnnncccgtttcttccgtgaatttttgttgtggcggccacccgaagcttttttgtctggctccgccactggtt 201  Q
    ||||||||||       ||||||| |||||  |  |||| |  | || ||||||| || |||||||||||||||||||||||||||    
T  38974824 cctctttgta-ttttttcccgttttttccgcaagattttttaatagcagccaccccaaacttttttgtctggctccgccactggtt 38974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 2338068 - 2337959
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| ||||||||||||||||||||  | ||||||||||||||| ||| |||||    
T  2338068 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggggaattggtgttacgtatttaggcggca 2337969  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  2337968 cctctttgta 2337959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 21240003 - 21240111
Alignment:
Q  19 atgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggcac 116  Q
    ||||||||||||||||||||||  ||||||| | ||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| ||||||    
T  21240003 atgcttgctctatgctagtatatacttcggcgtcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggcggcac 21240102  T
Q  117 ctctttgta 125  Q
    |||||||||    
T  21240103 ctctttgta 21240111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 52894116 - 52894224
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||| ||||||||||  ||||||||| || |||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| |||||    
T  52894116 tatgcttgctctgtgctagtatatacttcggcctcat-gtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggcggca 52894214  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  52894215 cctctttgta 52894224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12707387 - 12707451
Alignment:
Q  18 tatgcttgctctatgctagtatacttcggccttattgtttgatgtcatcgttggttttgggtttt 82  Q
    ||||||||||| ||||||||||||||||||||||||| ||| || | | |||||||||| |||||    
T  12707387 tatgcttgctccatgctagtatacttcggccttattgcttgttgcctttgttggttttgtgtttt 12707451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 3175110 - 3175219
Alignment:
Q  18 tatgcttgctctatgctagtata--cttcggccttattgtttgatgtcatcgttggttttgggttttctcgttgtattggtgttacgtatatagacggca 115  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| | | |    
T  3175110 tatgcttgctctatgctagtatatacttcggcctcattgtttgatgccattgttggttttgggttttctcggtgaattggtgttacgtatttaggcagaa 3175209  T
Q  116 cctctttgta 125  Q
    ||||||||||    
T  3175210 cctctttgta 3175219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 3175257 - 3175293
Alignment:
Q  164 gccacccgaagcttttttgtctggctccgccactggt 200  Q
    ||||||| || ||||||||||||||||||||||||||    
T  3175257 gccaccccaaacttttttgtctggctccgccactggt 3175293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 15302620 - 15302580
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactgg 199  Q
    |||||| ||||| || |||||||||||||||||||||||||    
T  15302620 tggcggtcaccctaaacttttttgtctggctccgccactgg 15302580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 6807397 - 6807440
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactggtta 202  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  6807397 tggcggccaccccaaacttttttgtctggctccgccactggtta 6807440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 8363953 - 8363992
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactg 198  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  8363953 tggcggccaccccaaacttttttgtctggctccgccactg 8363992  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 38871511 - 38871468
Alignment:
Q  159 tggcggccacccgaagcttttttgtctggctccgccactggtta 202  Q
    |||||||||| | || ||||||||||||||||||||||||||||    
T  38871511 tggcggccactccaaacttttttgtctggctccgccactggtta 38871468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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