View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5669_low_2 (Length: 299)

Name: NF5669_low_2
Description: NF5669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5669_low_2
NF5669_low_2
[»] chr1 (1 HSPs)
chr1 (10-299)||(47193249-47193547)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 47193547 - 47193249
Alignment:
Q  10 aagaatatcacttaaacaatcttgataaccaaaaataacatggttgcaatgttttcaaattgagcacatgcaagccaaccaaatcgattgaagacaatcc 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47193547 aagaatatcacttaaacaatcttgataacaaaaaataacatggttgcaatgttttcaaattgagcacatgcaagccaaccaaatcgaatgaagacaatcc 47193448  T
Q  110 ttcacttttttcctttgtgacacctaacctttaaattgaaccacatgacaaagtttttgtcaagacacaactgattcctaaccaagatgatacatctaac 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47193447 ttcacttttttcccttgtgacacctaacctttaaattgaaccacatgacaaagtttttgtcaagacacaactaattcctaaccaagatgatacatctaac 47193348  T
Q  210 cataatttacgaaaaataggacattcaaaaaacaaataattggagg---------tatcacatctttccgcacataaaggtgatgttaaattatgtacc 299  Q
    |||||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||| |||||||||||||    
T  47193347 cataatttacgagaaataggacattcaaaaaacaaataattggaggtttcattcatatcacatctttccgcgcataaaggtgatgctaaattatgtacc 47193249  T

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