View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670-Insertion-10 (Length: 216)
Name: NF5670-Insertion-10
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-10 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-102
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 33368077 - 33368285
Alignment:
| Q |
6 |
cagttaatcggctaacttctgtttgtttggtcaaattcatctcaaaggagcataaaagagtcttcctttgaccragtgtatggccatctaccacagacgg |
105 |
Q |
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| T |
33368077 |
cagttaatcggcaaacttctgtttgtttggtcaaattcatctcaaaggagcagaaaagagtcttcctttgaccaagtgtaaggccatctaccacagacgg |
33368176 |
T |
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| Q |
106 |
aatggacctttggagatttttcattgaggagaatagaagttctttattaacaaaatccctgtagtttataactttgctttcataattacaagtgccaggc |
205 |
Q |
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| T |
33368177 |
aatggacctttggagatttttcattgaggagaatagaagttctttattaacaaaattcctgtagtttataacttttctttcataattacaagtgccaggc |
33368276 |
T |
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| Q |
206 |
tgcatcatc |
214 |
Q |
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||||||||| |
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| T |
33368277 |
tgcatcatc |
33368285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-77
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 20102053 - 20101846
Alignment:
| Q |
7 |
agttaatcggctaacttctgtttgtttggtcaaattcatctcaaaggagcataaaagagtcttcctttgaccragtgtatggccatctaccacagacgga |
106 |
Q |
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| T |
20102053 |
agttaatcggaaaacttctgttggtttggtcaatttcatcttaaaggagcagaaaagagtcttcctttgaccaagtgtaaggccatctaccatagacgga |
20101954 |
T |
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| Q |
107 |
atggacctttggagatttttcattgaggagaatagaagttctttattaacaaaatccctgtagtttataactttgctttcataattacaagtgccaggct |
206 |
Q |
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| T |
20101953 |
atgaacctttggagatttttcattgagaagaacagaagttctttgttaacaaaatccctgtactttatacttttgctttcataattacaagtgccaggct |
20101854 |
T |
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| Q |
207 |
gcatcatc |
214 |
Q |
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| T |
20101853 |
gcatcatc |
20101846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 147; Significance: 6e-78; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 147; E-Value: 6e-78
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 458 - 666
Alignment:
| Q |
6 |
cagttaatcggctaacttctgtttgtttggtcaaattcatctcaaaggagcataaaagagtcttcctttgaccragtgtatggccatctaccacagacgg |
105 |
Q |
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| T |
458 |
cagttaatcggaaaacttctgttggtttggtcaaattcatcttaaaggaggtgaaaagagtcttcctttgaccaagtgtaaggccatctaccatagacgg |
557 |
T |
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| Q |
106 |
aatggacctttggagatttttcattgaggagaatagaagttctttattaacaaaatccctgtagtttataactttgctttcataattacaagtgccaggc |
205 |
Q |
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| T |
558 |
aatggacccttggagatttttcattgagaagaatagaagttctttgttaacaaaatccctgtactttatacttttgctttcataattacaagtgccaggc |
657 |
T |
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| Q |
206 |
tgcatcatc |
214 |
Q |
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||||||||| |
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| T |
658 |
tgcatcatc |
666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 9872773 - 9872923
Alignment:
| Q |
31 |
tttggtcaaattcatctcaaaggagcataaaagagtcttcctttgaccragtgtatggccatctaccacagacggaatggacctttggagatttttcatt |
130 |
Q |
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||||| |||||| ||| ||| ||||| |||||| ||||||||||||| || || | ||||| |||| ||| ||||||||||||||||||| | || |
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| T |
9872773 |
tttggacaaatttttcttaaatgagcagaaaagaatcttcctttgaccaggtttaagcccatcaaccatagagggaatggacctttggagatctgctctt |
9872872 |
T |
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| Q |
131 |
gaggagaatagaagttctttattaacaaaatccctgtagtttataactttg |
181 |
Q |
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||| | |||| ||| ||||| | |||||||||| ||||| |||||| |||| |
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| T |
9872873 |
gagaacaatataagctctttgtcaacaaaatccttgtagcttataagtttg |
9872923 |
T |
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