View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5670-Insertion-2 (Length: 1055)
Name: NF5670-Insertion-2
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 842; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 8 - 1009
Target Start/End: Complemental strand, 54884641 - 54883620
Alignment:
| Q |
8 |
gagggtgcgtctcaaaatgttctagaaagctaagagcctttaatttggtgggagtacttgcaaagatttcatagcaacagacaactgttgcatctcttac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54884641 |
gagggtgcgtctcaaaatgttctagaaagctaagagcctttaatttggtgggggtacttgcaaagatttcatagcaacagacaactgttgcatctcttac |
54884542 |
T |
|
| Q |
108 |
aacttcatgttgtgtttggtttgatgcgctatggcgtcaatgacaccttcattgtgtttggaagccaaatcaaagacgattttagtatggaatggattgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54884541 |
aacttcatgttgtgtttggtttgatgcgctatggcgtcaaagacaccttcattgtgtttggaagccaaatcaaagacgattttagtatggaatggattgc |
54884442 |
T |
|
| Q |
208 |
aatgacttcaagtcacaaaatgggtaaggatcttttagttctagatggaaattgattctcacatgttaaaaacggcatagtcattgcagtacgtcaatca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54884441 |
aatgacttcaagtcacaaaatgggtaaggatcttttagttctagatggaaattgattctcacatgttaaaaacggcatagtcattgcagtacgtcaatca |
54884342 |
T |
|
| Q |
308 |
gaccaagtcatcaaacaactcacagtttccgttgatttcccaatccaatttaccatattaaatatttatccaattgagtgaatgtgtggtatattgacat |
407 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54884341 |
gaccaagtcatcaaacaactcacagtgtcagttgatttcccaatccaatttaccatattaaatatttatccaattgagtgaatgtgtggtatattgacgt |
54884242 |
T |
|
| Q |
408 |
gaggtaatacatgttaagagtgctacattggataaaatattacctaaaattcgattttgtaaggattaaattacaaacagatacaatattctcta-agtg |
506 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54884241 |
gaggtaatacatgttaagagtgcttcattggataaaatattacctaaaattcgattttgtaaggattaaattacaaacagatacaatattctctagagtg |
54884142 |
T |
|
| Q |
507 |
atttgttttttaaggaaagtggttttttgtccttaaaaaatctacaacaaatgacttcaatcggccggtttgttatggattataatagaactgatttgga |
606 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54884141 |
atttgttttttaagaaaagtggttttttgtccttaaaaaagctacaacaaatgacctcaatcggccggtttgttatggattacaatagaactgatttgga |
54884042 |
T |
|
| Q |
607 |
agccaaatcaaacacactcatagtttgtggtgaatcttagccaaatcaaactgatttgaattgcttttaaattcaacataatgagtatgactacaagtca |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54884041 |
agccaaatcaaacacactcatagtttgtggtgaatcttagccaaatcaaactgatttgaattgcttttaaattcaacataatgagtatgactacaagtca |
54883942 |
T |
|
| Q |
707 |
gagaatgaggtaaggatgttctagttctagatggaaatggattctctcaggatcttttgcgttgcttcaatgccaagtctatttagag------------ |
794 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54883941 |
gagaatgaggtagggatgttctagttctagatggaaatggattctctcaggatcttttgcgttgcttcaatgccaagtctatttagagggttttaagtgc |
54883842 |
T |
|
| Q |
795 |
actcggtgcggtttaaggttagtatttcaggcacttagtatttttcaatgttaaatgttaaagaacaatgttgtattgcacttcnnnnnnnntt-aataa |
893 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
54883841 |
actcggtgcggtttaaggttagtatttcaggcacttagtatttttcaatgttaaatgttaaagaacaatgttgtattgcacttcaaaaaaaattaaataa |
54883742 |
T |
|
| Q |
894 |
tgaatttcttgatttccctt-ggggag-ttttagttcattaaatcttttatgatacacttggatagattacattgctttcatatgg-tgatat-acagct |
989 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
54883741 |
tgaatttcttgatttcccttgggggagtttttagttcattaaatcttttatgttacacttagatagattacattgctttcatatggttgatataacagct |
54883642 |
T |
|
| Q |
990 |
gctt--gtttactagctgagaa |
1009 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
54883641 |
gctttgttttactagctgagaa |
54883620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 23 - 476
Target Start/End: Complemental strand, 54880004 - 54879543
Alignment:
| Q |
23 |
aatgttctagaaagctaagagcctttaatttggtgggagtacttgcaaagatttcatagcaacagacaactgttgcatctcttacaacttcatgttgtgt |
122 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||| |||||| | |||||||||| | || |||||||||||||||| ||||||||||| |||| | |
|
|
| T |
54880004 |
aatgttctagaaagctaaaagcataaaatttggtggggctacttgtagagatttcata--agca-acaactgttgcatctcctacaacttcatattgttt |
54879908 |
T |
|
| Q |
123 |
ttggtttgatgcgctatggcgtcaatgacaccttcattgtgtttggaagccaaatcaaagacgattttagtatggaatggattgcaatgacttcaagtca |
222 |
Q |
| |
|
||||||||| ||||||| ||||| | ||||||| ||| |||||||||||||||||||||||| | |||||| || |||||||| |||| | ||||||| |
|
|
| T |
54879907 |
ttggtttgacgcgctatagcgtcgaagacacctccatcgtgtttggaagccaaatcaaagacactcatagtatagagtggattgcgatgattacaagtca |
54879808 |
T |
|
| Q |
223 |
caaaatgggtaaggatcttttagttctagatggaaattgattctcacatgttaaaaacggcatagtcattgcagtacgtcaatcagaccaagt------- |
315 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| |||||| ||| | |||| | |||||||||||||||| ||||| || ||| | |
|
|
| T |
54879807 |
caaaatgggtaagaattttctagttctagatggaaatggattctgtaatgct-aaaatgacatagtcattgcagtaagtcaagaagttcaattgaatgaa |
54879709 |
T |
|
| Q |
316 |
catcaaac-----aactcacagtttccgttgatttcccaatccaatttaccatattaaatatttatccaattgagtgaatgtgtggtatattgacatgag |
410 |
Q |
| |
|
|| || | ||||||||||||| |||||||| ||||||||| ||||| | |||||||| ||||||||||||||||||||||||| | |||| || |
|
|
| T |
54879708 |
gattaagccatgaaactcacagtttcagttgattttccaatccaacttaccgcactaaatattaatccaattgagtgaatgtgtggtattgttacataag |
54879609 |
T |
|
| Q |
411 |
gtaatacatgttaagagtgctacattggataaaatattacctaaaattcgattttgtaaggattaa |
476 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||| |||| | | |||||||||| |||| |
|
|
| T |
54879608 |
gtaatacatgttaagagttctacgttggataaaatatgaccgaaaagttggttttgtaaggcttaa |
54879543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 806 - 877
Target Start/End: Complemental strand, 54885088 - 54885024
Alignment:
| Q |
806 |
tttaaggttagtatttcaggcacttagtatttttcaatgttaaatgttaaagaacaatgttgtattgcactt |
877 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54885088 |
tttaacgttagtatttcaggcacttggcatttttcaatgt-------taaagaacaatgttgtattgcactt |
54885024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 54883326 - 54883275
Alignment:
| Q |
678 |
ttcaacataatgagtatgactacaagtcagagaatgaggtaaggatgttcta |
729 |
Q |
| |
|
||||| ||||| ||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
54883326 |
ttcaatataattagtgtgactacaaggcagagaatgaggcaaggatgttcta |
54883275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 633
Target Start/End: Complemental strand, 54886788 - 54886685
Alignment:
| Q |
530 |
tttttgtccttaaaaaatctacaacaaatgacttcaatcggccggtttgttatggattataatagaactgatttggaagccaaatcaaacacactcatag |
629 |
Q |
| |
|
||||| ||||||||| | ||||||||| | | |||| | ||| |||||||| ||||| |||| ||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
54886788 |
tttttttccttaaaagagctacaacaagcggcctcaaactgcccgtttgttacagattacaataaaactgatttcgaagccaaatcaaacatactgttag |
54886689 |
T |
|
| Q |
630 |
tttg |
633 |
Q |
| |
|
|||| |
|
|
| T |
54886688 |
tttg |
54886685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 693 - 751
Target Start/End: Complemental strand, 54879821 - 54879764
Alignment:
| Q |
693 |
atgactacaagtcagagaatgaggtaaggatgttctagttctagatggaaatggattct |
751 |
Q |
| |
|
|||| ||||||||| | |||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
54879821 |
atgattacaagtcacaaaatg-ggtaagaattttctagttctagatggaaatggattct |
54879764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 54892310 - 54892264
Alignment:
| Q |
351 |
tccaatttaccatattaaatatttatccaattgagtgaatgtgtggt |
397 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||| |||||||| |
|
|
| T |
54892310 |
tccaatttaccacactaaatattaatccaattgagtgagtgtgtggt |
54892264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University