View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670-Insertion-3 (Length: 576)
Name: NF5670-Insertion-3
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 147 - 576
Target Start/End: Complemental strand, 43716544 - 43716121
Alignment:
| Q |
147 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaa-gctagagatgaatcagtgtct |
245 |
Q |
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| T |
43716544 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaaagctagagatgaatcagtgtct |
43716445 |
T |
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| Q |
246 |
cccagtaaacctgaagataagtctttattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
345 |
Q |
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| T |
43716444 |
cccagtaaacctgaagataagtct--attcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
43716347 |
T |
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| Q |
346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
445 |
Q |
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| T |
43716346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
43716247 |
T |
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| Q |
446 |
gatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaacttgt |
545 |
Q |
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| T |
43716246 |
gatttcctctgtatg-----tgatctttgaattattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaatttgt |
43716152 |
T |
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| Q |
546 |
tattattttttctagcttcttcttcttgttg |
576 |
Q |
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| T |
43716151 |
tattattttttctagcttcttcttcttgttg |
43716121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 43716645 - 43716542
Alignment:
| Q |
7 |
agattgtaccatatatgacttttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattta |
106 |
Q |
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| T |
43716645 |
agattgtaccatatatgacttttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattga |
43716546 |
T |
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| Q |
107 |
tttc |
110 |
Q |
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|||| |
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| T |
43716545 |
tttc |
43716542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 6814731 - 6814847
Alignment:
| Q |
7 |
agattgtaccatatatgacttttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattta |
106 |
Q |
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| T |
6814731 |
agattgtatcatatatgacatttttctcaccatcaatatctctggatatgtggagtctttggccagtgatgatggaagcattggcagattgggcaatcga |
6814830 |
T |
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| Q |
107 |
tttctttccaagtatgg |
123 |
Q |
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| T |
6814831 |
tttttttccaagtatgg |
6814847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 52887211 - 52887439
Alignment:
| Q |
7 |
agattgtaccatatatgacttttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattta |
106 |
Q |
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| T |
52887211 |
agattgtatcatatatgacttttttctctccaacaatatcactggacatgtggaacctttggccattgatgatggaagcactatcagattgggctattga |
52887310 |
T |
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| Q |
107 |
tttctttccaagtatggctctcaaatacatctgactacaattcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttc-ttttta |
205 |
Q |
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| T |
52887311 |
tttcttttcaagtatggctctcaactacatttgattgcaatt-atctcaactta---tctttgccttccaaaagttcagtac-tttggacttctttttta |
52887405 |
T |
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| Q |
206 |
tatgttaataacatagaaagctagagatgaatca |
239 |
Q |
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|||||||||| |||| |||||||||||||||| |
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| T |
52887406 |
cttgttaataacttagacagctagagatgaatca |
52887439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 423 - 574
Target Start/End: Original strand, 52891346 - 52891495
Alignment:
| Q |
423 |
tatcaacagagtttgtggaatatgatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctg------caggagtgggat |
516 |
Q |
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| T |
52891346 |
tatcaacagagtttgtggaatatgatttcctctgt-----aagtgatctttgaattattatcattaatttggccaccacctgctaggactggaatgggat |
52891440 |
T |
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| Q |
517 |
ctggtgattgtaaatgattgttaacttgttattattttttctagcttcttcttcttgt |
574 |
Q |
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| T |
52891441 |
ctggtgattgtaaatgattgttaac---ttattattttttctagcttcttcttgttgt |
52891495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 52890957 - 52891029
Alignment:
| Q |
271 |
tattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttat |
343 |
Q |
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| T |
52890957 |
tattcaaaaacatggaatatctgtcaaatattttcctggttgctctgacatttaagttaatataagtctttat |
52891029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 52891238 - 52891300
Alignment:
| Q |
346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattat |
408 |
Q |
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| T |
52891238 |
attttctacatatttacttgattagtttattctgcagatattatggttcctttggacaattat |
52891300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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