View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670-Insertion-4 (Length: 464)
Name: NF5670-Insertion-4
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 46121862 - 46122273
Alignment:
| Q |
7 |
agtttaacattctcattcataatattcttcttcatacacactcttttatgtgnnnnnnnnnnnnnnnnnngttgagagagggggcaaaatcttaaagaaa |
106 |
Q |
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| T |
46121862 |
agtttaacattctcattcataatattcttcttcatacacactcttttatgtgttttttttttttttt---gttgagagagggggcaaaatcttaaagaaa |
46121958 |
T |
|
| Q |
107 |
taacaatccataaaaatctaatgttttcttgctaaaatttaaatttaagattccacaaaatccaatttgttaaacaatccctcgaaattagatatannnn |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46121959 |
taacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttgttaaacaatccctcgaaattagatatatttt |
46122058 |
T |
|
| Q |
207 |
nnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnntatcataaaaaataagctttttaaatcctgtaaatcaccaaata |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
46122059 |
ttttatcaacacaactttttttaaaatacaaatagtcttaattgaat-------------acaaaaaataagctttttaaatcctgtaaatcaccaaatt |
46122145 |
T |
|
| Q |
307 |
ccatcctccgtttttaaaatttgtacctatgcatttcccgttaaacccatccatcccacagagtgtgtctacttaaaacgtcatctatctactgtcatgc |
406 |
Q |
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| T |
46122146 |
ccatcccccgtttttaaaatttgtacctatgcatttcccgtcaaacccatccatcccacaga----gtctacttaaaacgtcatctatctactctcatgc |
46122241 |
T |
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| Q |
407 |
cgagaatcaatatttcctttttgacttattct |
438 |
Q |
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| T |
46122242 |
cgagaatcaatatttcctttttgactcattct |
46122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
| Q |
162 |
caaaatccaatttgttaaacaatccctcgaaatt |
195 |
Q |
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| T |
1152179 |
caaaatccaatttattaaacaatccctcgaaatt |
1152212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 30385130 - 30385166
Alignment:
| Q |
159 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
195 |
Q |
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| T |
30385130 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
30385166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 31067625 - 31067589
Alignment:
| Q |
159 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
195 |
Q |
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| T |
31067625 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
31067589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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