View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5670-Insertion-5 (Length: 420)

Name: NF5670-Insertion-5
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5670-Insertion-5
NF5670-Insertion-5
[»] chr2 (1 HSPs)
chr2 (8-420)||(41998807-41999235)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 41999235 - 41998807
Alignment:
Q  8 gaccaaatgacagttaaagatttcactggatactca----gtatctaaggggcaaaatcgtcacataactcaaattattcaacactatataataactacg 103  Q
    |||||||| |||||| |||||||||| |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41999235 gaccaaatcacagttcaagatttcacaggatactcactcagtatctaaggggcaaaatcgtcacataactcaaattattcaacactatataataactacg 41999136  T
Q  104 ttgtcagaacctcaaactcaaaccccatgcagaaactgtagtccaccgcaacaccataaactaagttcatcattaatttcatttcagcatatata----- 198  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  41999135 ttgtcagaacctcaaactcaaaccccatgcagaaactgtagttcaccgcaacaccataaactaagttcatcattaatttcatttcagcatatatatatat 41999036  T
Q  199 -------atataaactttatactataattaaatcctcaatttcaaccatgagttgcgctacgtttttccaaactatatccgtcgcagttatactactagc 291  Q
           |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||  |||||||||||    
T  41999035 atatataatataaactttatactataattaaatcctcaatttcaaccatgagtagcgttaggtttttccaaactatctccgtcgcagcaatactactagc 41998936  T
Q  292 actcaccgccaccgtccattcatgtccaccgtcagatagggcggcgttattagcgttcaaagcagcactccacgaaccccaactcggaaaactcggtatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41998935 actcaccgccaccgtccattcatgtccaccgtcagatagggcggcgttattagcgttcaaagcagcactccacgaaccccaactcggaaaactcggtatc 41998836  T
Q  392 ttcacctcatggaccggagcagattgctg 420  Q
    |||||||||||||||||||||||||||||    
T  41998835 ttcacctcatggaccggagcagattgctg 41998807  T

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