View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5670-Insertion-6 (Length: 412)

Name: NF5670-Insertion-6
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5670-Insertion-6
NF5670-Insertion-6
[»] chr6 (7 HSPs)
chr6 (10-412)||(6456439-6456841)
chr6 (126-387)||(6464515-6464776)
chr6 (185-397)||(6504718-6504933)
chr6 (178-294)||(6516941-6517057)
chr6 (268-397)||(6473768-6473897)
chr6 (187-241)||(6521454-6521508)
chr6 (198-367)||(6525625-6525794)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 6456439 - 6456841
Alignment:
Q  10 gagttaactccctgacaaatatctcgcataacactatcttttcaacgctcaatttatcatcattaacgtgtattggtatgcgtagtagttaacatctgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6456439 gagttaactccctgacaaatatctcgcataacactatcttttcaacgctcaatttatcatcattaacgtgtattggtatgcctagtagttaacatctgtt 6456538  T
Q  110 aattaccgatagagtttaatggcagtaatgaccaaaccagcagtgttttccatgaccaaactcctcctcaccatcacctctactgtgaatccaccacaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6456539 aattaccgatagagtttaatggcagtaatgaccaaaccagcagtgttttccatgatcaaactcctcctcaccatcacctctactgtgaatccaccacaaa 6456638  T
Q  210 agattactcaccgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataagtaccttccatagcatatataaaac 309  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6456639 agattactcatcgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttgtttatcataagtaccttccatagcatatataaaac 6456738  T
Q  310 ctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456739 ctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgat 6456838  T
Q  410 agg 412  Q
    |||    
T  6456839 agg 6456841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 126 - 387
Target Start/End: Original strand, 6464515 - 6464776
Alignment:
Q  126 taatggcagtaatgaccaaaccagcagtgttttccatgaccaaactcctcctcaccatcacctctactgtgaatccaccacaaaagattactcaccgagt 225  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| ||||||||||| || |||||| |||  ||||    
T  6464515 taatgacagtaattaccaaaccagcagtgttttccatgaccaaactcctcatcttcattacctctactatgaatccaccataagagattagtcaatgagt 6464614  T
Q  226 tcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataagtaccttccatagcatatataaaacctttccacccttcacc 325  Q
    | |||||||||||||| ||||| | ||||| ||| | |||  ||||||| |||||||||   |||||||  ||||| | ||| |||||||| ||||| ||    
T  6464615 ttccatcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctcc 6464714  T
Q  326 aacacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacat 387  Q
    |||||||| ||||||||||  ||| |||||||| |||||||| ||||| ||| || ||||||    
T  6464715 aacaccttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacat 6464776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 397
Target Start/End: Original strand, 6504718 - 6504933
Alignment:
Q  185 acctctactgtgaatccaccacaaaagattactcaccgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataa 284  Q
    |||||| || ||||||||||||||||||||| |||  ||||| ||| |||||||||| ||||| | ||||| ||| | ||| |||||||| |||||||||    
T  6504718 acctctgctatgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataa 6504817  T
Q  285 gtaccttccatagcatatataaaacctttccacccttcaccaa---cacctttcctattcaaattaggtaatgtccattccacaagctcctttacataac 381  Q
     | |||||||  | |||||  || || ||||| ||||| ||||   |||||| ||||||||||  ||| |||||||| || ||||| || || ||||||     
T  6504818 attccttccaatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataat 6504917  T
Q  382 caacatccgaaaacaa 397  Q
    ||||||| ||||||||    
T  6504918 caacatcagaaaacaa 6504933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 6517057 - 6516941
Alignment:
Q  178 caccatcacctctactgtgaatccaccacaaaagattactcaccgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttcttt 277  Q
    |||| ||||||||||| ||||||||||||||||||||| |||  ||||| ||| |||||||||| ||||| | ||||| ||| | ||| |||||||| ||    
T  6517057 caccttcacctctactatgaatccaccacaaaagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcatt 6516958  T
Q  278 atcataagtaccttcca 294  Q
    ||||||| | |||||||    
T  6516957 atcataaattccttcca 6516941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 397
Target Start/End: Complemental strand, 6473897 - 6473768
Alignment:
Q  268 cactttctttatcataagtaccttccatagcatatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaag 367  Q
    ||||||| ||||||||| | |||| ||  ||||| | |||||||||||| |||||  ||||||||| |||||| |||  | | |||||||| ||||||||    
T  6473897 cactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctatttaaagcaagcaatgtccactccacaag 6473798  T
Q  368 ctcctttacataaccaacatccgaaaacaa 397  Q
     ||||| |||||| ||||||| ||||||||    
T  6473797 ttccttcacataatcaacatctgaaaacaa 6473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 6521508 - 6521454
Alignment:
Q  187 ctctactgtgaatccaccacaaaagattactcaccgagttcccatcatcaaaacc 241  Q
    |||| ||||||||||||||||| ||||||||||  || |||||||||||||||||    
T  6521508 ctctgctgtgaatccaccacaacagattactcaatgaattcccatcatcaaaacc 6521454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 367
Target Start/End: Original strand, 6525625 - 6525794
Alignment:
Q  198 atccaccacaaaagattactcaccgagttcccatcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataagtaccttccatag 297  Q
    |||||||| || |||||| |||  ||||| ||||||||||||||||||||   ||||| ||| |||   |||||||| ||||||||| | |||| ||  |    
T  6525625 atccaccataatagattagtcaatgagtttccatcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttgcaagg 6525724  T
Q  298 catatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaag 367  Q
    |||| | ||| || ||||| || ||  ||||||| | ||| || |||  |||||||||||| ||||||||    
T  6525725 cataaacaaaccccttccaaccctcttcaacaccatccctttttaaagcaggtaatgtccactccacaag 6525794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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