View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670-Insertion-7 (Length: 374)
Name: NF5670-Insertion-7
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 36451853 - 36452219
Alignment:
| Q |
8 |
gatccaagtccacataaagacgggcgtaaaccaattggaggtggcataatgagtagtgatgatggctataataatggatatggtggtgacaaagatggac |
107 |
Q |
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| T |
36451853 |
gatccaagtccacataaagacaggcgtaaaccaattggaggtggcataatgagtagtgatgatggctataataatggatatggtggtgacaaagatggac |
36451952 |
T |
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| Q |
108 |
gcaggccgattggaattagtccagtaaagaatgataaatatgatggtactaatggctacggcagtgatcaccgtgcaacacctgttggggatccaaatcc |
207 |
Q |
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| T |
36451953 |
gcaggccgattggaattagtccagtaaagaatgataaatatgatggtactaatggctacggcagtgatcaccgtgcaacacctgttggggatccaaatcc |
36452052 |
T |
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| Q |
208 |
ctacaaagaaggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataatggatacggtggtgacaaaggacacaagcca |
307 |
Q |
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| T |
36452053 |
ctacaaagaaggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataacggatacggtggtgacaaaggacacaagcca |
36452152 |
T |
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| Q |
308 |
attggaattagtccaactaggagtaacaattatgatggtcctaatgggtttggcggtgaccatcgtg |
374 |
Q |
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| T |
36452153 |
attggaattagtccaactaggagtaacaattatgatggtcctaatgggtttggcggtgaccatcgtg |
36452219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 23 - 374
Target Start/End: Original strand, 36452057 - 36452414
Alignment:
| Q |
23 |
aaagacgggcgtaaaccaattggaggtggca---taatgagtagtgatgatggctataataat---ggatatggtggtgacaaagatggacgcaggccga |
116 |
Q |
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| T |
36452057 |
aaagaaggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataacggatacggtggtgacaaag---gacacaagccaa |
36452153 |
T |
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| Q |
117 |
ttggaattagtccagtaaagaatgataaatatgatggtactaatggctacggcagtgatcaccgtgcaacacctgttggggatccaaatccctacaaaga |
216 |
Q |
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| T |
36452154 |
ttggaattagtccaactaggagtaacaattatgatggtcctaatgggtttggcggtgaccatcgtgcaacaagtgtgggggatccaaatccctaccaaga |
36452253 |
T |
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| Q |
217 |
aggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataatggatacggtggtgaca---aaggacacaagccaattgga |
313 |
Q |
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| T |
36452254 |
aggccgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataatggatacggtggtgacaaagaaggacgcaagccagttgga |
36452353 |
T |
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| Q |
314 |
attagtccaactaggagtaacaattatgatggtcctaatgggtttggcggtgaccatcgtg |
374 |
Q |
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| T |
36452354 |
attagtccaactgggaatagcaattatgatggtcctaatcggtatagtggtgaccatcgtg |
36452414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 267
Target Start/End: Original strand, 36452258 - 36452499
Alignment:
| Q |
32 |
cgtaaaccaattggaggtggca---taatgagtagtgatgatggctataat---aatggatatggtggtgacaaagatggacgcaggccgattggaatta |
125 |
Q |
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| T |
36452258 |
cgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataatggatacggtggtgacaaagaaggacgcaagccagttggaatta |
36452357 |
T |
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| Q |
126 |
gtccagtaaagaatgataaatatgatggtactaatggctacggcagtgatcaccgtgcaacacctgttggggatccaaatccctacaaagaaggtcgtaa |
225 |
Q |
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| T |
36452358 |
gtccaactgggaatagcaattatgatggtcctaatcggtatagtggtgaccatcgtgcaacaagtgtaggagatccaaatccctacaaagaagggcgtaa |
36452457 |
T |
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| Q |
226 |
accaattggaggtggcaacctaaggagtactcatgatggcta |
267 |
Q |
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| T |
36452458 |
accaatcggagtagttagcctaaagagtactcatgatggcta |
36452499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 322
Target Start/End: Original strand, 36451738 - 36451975
Alignment:
| Q |
85 |
atatggtggtgacaaagatggacgcaggccgattggaattagtccagtaaagaatgataaatatgatggta---ctaatggctacggcagtgatcaccgt |
181 |
Q |
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| T |
36451738 |
atatggtggtgacagagacggacgcaagccaattggaattagtccaattaagaatcgcaaatatggtggtggtcctaatggttatggtggtgctcatcgt |
36451837 |
T |
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| Q |
182 |
gcaacacctgttggggatccaaatccctacaaagaaggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgataatggat |
281 |
Q |
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| T |
36451838 |
gcaacagctataggggatccaagtccacataaagacaggcgtaaaccaattggaggtggca---taatgagtagtgatgatggct---ataataatggat |
36451931 |
T |
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| Q |
282 |
acggtggtgacaaa---ggacacaagccaattggaattagtcca |
322 |
Q |
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| T |
36451932 |
atggtggtgacaaagatggacgcaggccgattggaattagtcca |
36451975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 36452567 - 36452701
Alignment:
| Q |
134 |
aagaatgataaatatgatggtactaatggctacggcagtgatcaccgtgcaacacctgttggggatccaaatccctacaaagaaggtcgtaaaccaattg |
233 |
Q |
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| T |
36452567 |
aagaatgacaactatgatggtcctcataggtatggtggtgaccaccgtgcagcagccgttggagatccaaatccttataaagaaggacgcaaaccaattg |
36452666 |
T |
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| Q |
234 |
gaggtggcaacctaaggagtactcatgatggctat |
268 |
Q |
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| T |
36452667 |
gagtaggtagcataaggagtactcaagatggctat |
36452701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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