View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670-Insertion-8 (Length: 312)
Name: NF5670-Insertion-8
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670-Insertion-8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 38155378 - 38155684
Alignment:
| Q |
7 |
aataggttggtgaacccattcttcataagcttcaccaagataaccaacctgtcacatattgttgtaaaattaaattgtgatggtgcagtgattaaaa-aa |
105 |
Q |
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| T |
38155378 |
aataggttggtgaacccattcttcataagcttcaccaagataaccaacctgtcacatagtgttgtaaaattaaattgtgatggtgcagtgattaaaaaaa |
38155477 |
T |
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| Q |
106 |
gttgaggataaataaaaatgtaataatttgagtttacttggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccatcttgaaagtgaa |
205 |
Q |
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| T |
38155478 |
gttgaggataaataaaaatgtaataatttgagtttacttggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccatcttgaaagtgaa |
38155577 |
T |
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| Q |
206 |
gacaaactttagaaatgtaaggcagtagcatacacacttctatagtgatattcttgaagaggtaatgtgatgcctatttatcagtagcacacacactttt |
305 |
Q |
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| T |
38155578 |
gacaaactttagaaatgtaaggcagtagcatacacacttctatagtgataattttgaagaggtaatgtcatgcctatttatcagtagcatacacactttt |
38155677 |
T |
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| Q |
306 |
atacaat |
312 |
Q |
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| T |
38155678 |
atacaat |
38155684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 38164270 - 38164334
Alignment:
| Q |
7 |
aataggttggtgaacccattcttcataagcttcaccaagataaccaacctgtcacatattgttgt |
71 |
Q |
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| T |
38164270 |
aataggttgatgaacccatttatcataatcttcaccaagatgaccaacctgtcatatagtgttgt |
38164334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 38164558 - 38164612
Alignment:
| Q |
139 |
ttacttggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccat |
193 |
Q |
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| T |
38164558 |
ttacctggcaaacaaggggtttattcaaatcaacaacaaatttgtttgcaaccat |
38164612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 11770434 - 11770381
Alignment:
| Q |
144 |
tggaaaacaaggggcttattcaaatcaacaacaaatttctctgcaaccatcttg |
197 |
Q |
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| T |
11770434 |
tggaaaacaaggggcttatccaaatcaactacaaagttctgggcaaccatcttg |
11770381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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