View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670_high_3 (Length: 412)
Name: NF5670_high_3
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 36451857 - 36451473
Alignment:
| Q |
18 |
ggatcccctatagctgttgcacgatgagcactaccataaccattaggaccaccaccatatttgcgattcttaattggactaattccaattggcttgcgtc |
117 |
Q |
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| T |
36451857 |
ggatcccctatagctgttgcacgatgagcaccaccataaccattaggaccaccaccatatttgcgattcttaattggactaattccaattggcttgcgtc |
36451758 |
T |
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| Q |
118 |
cgtctctgtcaccaccatatggataattagtaccataactatcattatggttgttaacggtgctacctccaattggcttacgtccatcagcactaggctg |
217 |
Q |
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| T |
36451757 |
cgtctctgtcaccaccatatggataattagtaccataactatcattatggttgttaacggtactacctccaattggcttacgtccatcagcactaggctg |
36451658 |
T |
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| Q |
218 |
tggtgtatggcgaccgcgatcaacaatgggcccgtacctttgaggatcacggctaccttcatgattctgctgcaccttagctgggaactgaacatcaact |
317 |
Q |
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| T |
36451657 |
tggtgtatggcgaccgcgatcaacaatgggcccgtacctttgaggatcatggctaccttcatgattctgctgcaccttagctgggaactgaacatcaact |
36451558 |
T |
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| Q |
318 |
ttacgcggagagctatgaacagggcttaattgacgacgcctttcatcatcatcagattcatcctctgaagagggatatttctctg |
402 |
Q |
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| T |
36451557 |
ttacgcggagagctatgaacagggcttaattgacgacgcctttcatcatcatcaaattcatcctctgaagagggatatttctctg |
36451473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 36451984 - 36451930
Alignment:
| Q |
83 |
attcttaattggactaattccaattggcttgcgtccgtctctgtcaccaccatat |
137 |
Q |
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| T |
36451984 |
attctttactggactaattccaatcggcctgcgtccatctttgtcaccaccatat |
36451930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 36452363 - 36452321
Alignment:
| Q |
91 |
ttggactaattccaattggcttgcgtccgtctctgtcaccacc |
133 |
Q |
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| T |
36452363 |
ttggactaattccaactggcttgcgtccttctttgtcaccacc |
36452321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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