View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5670_high_8 (Length: 243)

Name: NF5670_high_8
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5670_high_8
NF5670_high_8
[»] chr7 (7 HSPs)
chr7 (1-226)||(46121640-46121867)
chr7 (40-77)||(835093-835130)
chr7 (40-77)||(1200273-1200310)
chr7 (41-77)||(47879759-47879795)
chr7 (41-77)||(47914837-47914873)
chr7 (41-76)||(40098533-40098568)
chr7 (41-77)||(43392028-43392064)
[»] chr3 (4 HSPs)
chr3 (38-77)||(46174788-46174827)
chr3 (128-178)||(6976140-6976190)
chr3 (41-77)||(44761621-44761657)
chr3 (41-73)||(45135759-45135791)
[»] chr4 (5 HSPs)
chr4 (41-77)||(7007926-7007962)
chr4 (129-178)||(9163620-9163669)
chr4 (41-77)||(9163737-9163773)
chr4 (41-77)||(28542123-28542159)
chr4 (41-77)||(41321327-41321363)
[»] chr2 (6 HSPs)
chr2 (41-76)||(34027520-34027555)
chr2 (41-77)||(9120750-9120786)
chr2 (41-77)||(12408004-12408040)
chr2 (41-77)||(12420064-12420100)
chr2 (41-77)||(20605559-20605595)
chr2 (41-77)||(32125905-32125941)
[»] chr1 (6 HSPs)
chr1 (128-183)||(28337359-28337414)
chr1 (41-74)||(47781317-47781350)
chr1 (47-75)||(27873935-27873963)
chr1 (41-77)||(32588246-32588282)
chr1 (41-77)||(48525140-48525176)
chr1 (41-77)||(49197764-49197800)
[»] chr8 (3 HSPs)
chr8 (41-77)||(13477818-13477854)
chr8 (41-77)||(32711131-32711167)
chr8 (41-77)||(42734818-42734854)
[»] chr5 (3 HSPs)
chr5 (41-77)||(4771770-4771806)
chr5 (41-77)||(7016269-7016305)
chr5 (49-77)||(43319620-43319648)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46121640 - 46121867
Alignment:
Q  1 ctacaagaatttgtacaattatcaatgtaactttttcggagtgtatttgattaggattttaaaagataatttttgttgnnnnnnngtattgttgatttta 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||| |||||||    
T  46121640 ctacaggaatttgtacaattattaatgtaactttttcggagtgtattggattaggattttaaaagataatttttgttgaaaaaaagtattgtggatttta 46121739  T
Q  101 aaagattttaatgacattttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaacttgattttgtggatt- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  46121740 aaagattttaatgacattttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttaaagaacttgattttgtggattt 46121839  T
Q  200 -taagatttgaaaggtctatgaagttta 226  Q
     |||||||| | ||||||||||||||||    
T  46121840 ataagatttcagaggtctatgaagttta 46121867  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 835130 - 835093
Alignment:
Q  40 agtgtatttgattaggattttaaaagataatttttgtt 77  Q
    |||||||| |||||||||||||||||||||||||||||    
T  835130 agtgtattggattaggattttaaaagataatttttgtt 835093  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 1200310 - 1200273
Alignment:
Q  40 agtgtatttgattaggattttaaaagataatttttgtt 77  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1200310 agtgtattggattaggattttaaaagataatttttgtt 1200273  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 47879795 - 47879759
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47879795 gtgtattggattaggattttaaaagataatttttgtt 47879759  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 47914873 - 47914837
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914873 gtgtattggattaggattttaaaagataatttttgtt 47914837  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 40098568 - 40098533
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgt 76  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40098568 gtgtatttgattaggattttaaaagattatttttgt 40098533  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 43392028 - 43392064
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43392028 gtgtattggattaggattttaaaggataatttttgtt 43392064  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 46174827 - 46174788
Alignment:
Q  38 ggagtgtatttgattaggattttaaaagataatttttgtt 77  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46174827 ggagtgtattcgattaggattttaaaagataatttttgtt 46174788  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 6976190 - 6976140
Alignment:
Q  128 ctatcaatatttacaatttggattttaaaggattcatatcataagatttta 178  Q
    ||||||| ||||||||||||||||| || ||||| | ||||||||||||||    
T  6976190 ctatcaagatttacaatttggatttcaatggatttacatcataagatttta 6976140  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 44761621 - 44761657
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  44761621 gtgtattggattaggattttaaaggataatttttgtt 44761657  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 45135791 - 45135759
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttt 73  Q
    |||||||||||||||||||||||||| ||||||    
T  45135791 gtgtatttgattaggattttaaaagacaatttt 45135759  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 7007962 - 7007926
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7007962 gtgtattggattaggattttaaaagataatttttgtt 7007926  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 9163669 - 9163620
Alignment:
Q  129 tatcaatatttacaatttggattttaaaggattcatatcataagatttta 178  Q
    |||||| ||||||||||||||||| || ||||| ||| ||||||||||||    
T  9163669 tatcaagatttacaatttggatttcaatggatttataccataagatttta 9163620  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 9163773 - 9163737
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  9163773 gtgtattggattatgattttaaaagataatttttgtt 9163737  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 28542159 - 28542123
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  28542159 gtgtattggattaggattttaaaggataatttttgtt 28542123  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 41321363 - 41321327
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  41321363 gtgtattggattaggattttaaaagatgatttttgtt 41321327  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 34027520 - 34027555
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgt 76  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34027520 gtgtatttgattaggattttaaaagattatttttgt 34027555  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 9120786 - 9120750
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9120786 gtgtattagattaggattttaaaggataatttttgtt 9120750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 12408040 - 12408004
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12408040 gtgtattggattaggattttaaaggataatttttgtt 12408004  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 12420100 - 12420064
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12420100 gtgtattggattaggattttaaaggataatttttgtt 12420064  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 20605595 - 20605559
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  20605595 gtgtattggattaggattttaaaggataatttttgtt 20605559  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 32125941 - 32125905
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  32125941 gtgtattggattaggattttaaaggataatttttgtt 32125905  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 28337359 - 28337414
Alignment:
Q  128 ctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaa 183  Q
    ||||||| ||||| |||||| |||| ||| |||| |||||||||||||||||||||    
T  28337359 ctatcaagatttaaaatttgaatttgaaatgatttatatcataagattttatagaa 28337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 47781350 - 47781317
Alignment:
Q  41 gtgtatttgattaggattttaaaagataattttt 74  Q
    ||||||| ||||||||||||||||||||||||||    
T  47781350 gtgtattggattaggattttaaaagataattttt 47781317  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 27873935 - 27873963
Alignment:
Q  47 ttgattaggattttaaaagataatttttg 75  Q
    |||||||||||||||||||||||||||||    
T  27873935 ttgattaggattttaaaagataatttttg 27873963  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 32588246 - 32588282
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  32588246 gtgtattggattaggatcttaaaagataatttttgtt 32588282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 48525176 - 48525140
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  48525176 gtgtattggattaggattttaaaggataatttttgtt 48525140  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 49197764 - 49197800
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  49197764 gtgtattggattaggattttaaaagacaatttttgtt 49197800  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 13477818 - 13477854
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  13477818 gtgtattggattaggattttaaaggataatttttgtt 13477854  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 32711131 - 32711167
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  32711131 gtgtattggattaggattttaaaggataatttttgtt 32711167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 42734818 - 42734854
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  42734818 gtgtattggattaggattttaaaggataatttttgtt 42734854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 4771770 - 4771806
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||||||||||||||||||| || ||||||||||    
T  4771770 gtgtatttgattaggattttaaaggacaatttttgtt 4771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 7016269 - 7016305
Alignment:
Q  41 gtgtatttgattaggattttaaaagataatttttgtt 77  Q
    ||||||||||||||||||||||| || ||||||||||    
T  7016269 gtgtatttgattaggattttaaaggacaatttttgtt 7016305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 43319648 - 43319620
Alignment:
Q  49 gattaggattttaaaagataatttttgtt 77  Q
    |||||||||||||||||||||||||||||    
T  43319648 gattaggattttaaaagataatttttgtt 43319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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