View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5670_high_9 (Length: 238)
Name: NF5670_high_9
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38155162 - 38155384
Alignment:
| Q |
1 |
ctgaaagagttatatatgaaacaagatgcaactggtacccaaacaattggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaaaaaattct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155162 |
ctgaaagagttatatatgaaataagatgcaactggtacccaaacaattggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaaaaaattct |
38155261 |
T |
|
| Q |
101 |
taattaattttgatacattaaaatgaatgaatgatatgaaaaatgtaatgtagctagggttatataggtacctccaagaaactgctatgaaagaaacgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155262 |
caattaattttgatacattaaaatgaatgaatgatatgaaaaatgtaatgtatttagggttatataggtacctccaagaaactgctatgaaagaaacgag |
38155361 |
T |
|
| Q |
201 |
ggctttccttgctcataataggt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38155362 |
ggctttccttgctcataataggt |
38155384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38163958 - 38164049
Alignment:
| Q |
1 |
ctgaaagagttatatatgaaacaagatgcaactggtacccaaacaattggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaa |
92 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||| | ||||| |||||||| |||||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
38163958 |
ctgaaagagctataaatgaaacaagatgcaattggaatccaaataattggaatcacccaccaagcagttcgcgtgaaaacctgttccaacaa |
38164049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 38164193 - 38164276
Alignment:
| Q |
140 |
aaaatgtaatgtagctagggttatataggtacctccaagaaactgctatgaaagaaacgagggctttccttgctcataataggt |
223 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
38164193 |
aaaatttaatgtaggtagggtagggtaggtacctccaagatattgctatgaaagaaacgagggccttccttgcccataataggt |
38164276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University