View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670_low_13 (Length: 234)
Name: NF5670_low_13
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670_low_13 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 27395946 - 27396140
Alignment:
| Q |
11 |
catcatcagtccgagttctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagcca |
110 |
Q |
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| T |
27395946 |
catcatcaggccgagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagcca |
27396045 |
T |
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| Q |
111 |
agttacaaggta-tttttcctctcttcttgcttttttgtctatcctcttatttatgtcacttgctttttccatggttcacattttatatatacct |
204 |
Q |
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| T |
27396046 |
agttacaaggtattttttcctctcttcttgcttttttgtctatcctcttatttatgtcacttgctttttccatggttcacattttatatatacct |
27396140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 43160394 - 43160468
Alignment:
| Q |
50 |
cttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaagttacaaggtatt |
124 |
Q |
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| T |
43160394 |
cttcttccacatttaagagggttggatgaagaacaaatgatttagaaggaaagagaagccaagatacaaggtatt |
43160468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 51479938 - 51480043
Alignment:
| Q |
22 |
cgagttctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaagttacaaggt |
121 |
Q |
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| T |
51479938 |
cgagctctccaagtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggt |
51480037 |
T |
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| Q |
122 |
attttt |
127 |
Q |
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| |||| |
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| T |
51480038 |
actttt |
51480043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 30207375 - 30207294
Alignment:
| Q |
50 |
cttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaagttacaaggtatttttcctc |
131 |
Q |
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| T |
30207375 |
cttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagacaaggtatttttcctc |
30207294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 51455442 - 51455531
Alignment:
| Q |
23 |
gagttctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaag |
112 |
Q |
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| T |
51455442 |
gagttctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaagccaag |
51455531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 51496983 - 51497087
Alignment:
| Q |
28 |
ctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaagttacaaggtat-ttt |
126 |
Q |
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|||||| |||| ||| |||| ||| ||||| |||||| || |||||| |||| ||||||| ||||||||||||||||| ||| |||||||||| ||| |
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| T |
51496983 |
ctccaaatatatgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtatattt |
51497082 |
T |
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| Q |
127 |
tcctc |
131 |
Q |
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| T |
51497083 |
tcctc |
51497087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 138047 - 137943
Alignment:
| Q |
23 |
gagttctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatagaagccaagttacaaggta |
122 |
Q |
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|||||||||||||||| ||| ||| ||||||||| |||||| | ||| |||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
138047 |
gagttctccaagtatatgctgaaataccttcttccatatttaagagaattagatctagaacaaatggctgagaaggagatagaagccaagatacaaggta |
137948 |
T |
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| Q |
123 |
ttttt |
127 |
Q |
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||||| |
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| T |
137947 |
ttttt |
137943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 18079580 - 18079661
Alignment:
| Q |
22 |
cgagttctccaagtatacgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggtcgagaaggagatag |
104 |
Q |
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| T |
18079580 |
cgagctctccaagtatatgctgaaaga-cttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatag |
18079661 |
T |
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