View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670_low_14 (Length: 211)
Name: NF5670_low_14
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 41323198 - 41323002
Alignment:
| Q |
1 |
atcctatatgcagagtaaatagtaatagagaaaagtttctttcgcacacaatttgacatcaatgtcatatttttatactgttttcgctttctatatagct |
100 |
Q |
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| T |
41323198 |
atcctatatgcagagtaaatagtaatagagaaaagtttctttcgcacacaatttgacatcaatgtcatatttttatacggttttcgctttctatatagct |
41323099 |
T |
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| Q |
101 |
ctttttcgggtccaacatctgttaagtgtgaaaatatgatagatcaggcagttacttgcttcataagtaactgagtagttagacaactaactaactg |
197 |
Q |
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| T |
41323098 |
ctttttcgggtccaacatctgttaagtgtgaaaatatgatagatcaggcagttacttgcttcataagtaactgagtagttagacaactaactaactg |
41323002 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 1328291 - 1328363
Alignment:
| Q |
124 |
aagtgtgaaaatatgatagatcaggcagttacttgcttcataagtaactgagtagttagacaactaactaact |
196 |
Q |
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| T |
1328291 |
aagtgtgaaaatatgatagattagacgattacttgcttcacaagtaattgactagttaggtagctaactaact |
1328363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 2048710 - 2048642
Alignment:
| Q |
124 |
aagtgtgaaaatatgatagatcaggcagttacttgcttcataagtaactgagtagttagacaactaact |
192 |
Q |
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| T |
2048710 |
aagtgcgaaaatttgatagattatgcaattacttgcttcacaagtaattgactagttaggtaactaact |
2048642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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