View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5670_low_8 (Length: 294)
Name: NF5670_low_8
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5670_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 38154897 - 38155178
Alignment:
| Q |
13 |
aatattataaggaaaagcattattatgtagaaagaggaataccggagaggcaaataaaacggctgcagttggtggtaaaacaagtcttaagctatccatt |
112 |
Q |
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| T |
38154897 |
aatattataaggaaaagcattattatgtagaaagaggaataccggagaggcaaataaaacggctgcagttggtggtaaaacaagtcttaagctatccatt |
38154996 |
T |
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| Q |
113 |
gggtgcttatggtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcga |
212 |
Q |
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| T |
38154997 |
gggtgcttatggtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcga |
38155096 |
T |
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| Q |
213 |
ccaatgtccatacaaaaatgccaagaagtacgaaaagagtgatttgaggaatagggagtcccaatctgaaagagttatatat |
294 |
Q |
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| T |
38155097 |
ccaatgtccatacaaaaatgccaagtagcacgaaaagagtgatttgaggaatagggagtcccaatctgaaagagttatatat |
38155178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 82 - 291
Target Start/End: Original strand, 38163762 - 38163971
Alignment:
| Q |
82 |
tggtggtaaaacaagtcttaagctatccattgggtgcttatggtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaaca |
181 |
Q |
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| T |
38163762 |
tggtggaaaaacaagtcttaagctatccatagggtgcttatggtggcaaccatggagaagataatgcattgtatttccccaatagctcttagtttgaaca |
38163861 |
T |
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| Q |
182 |
tggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgccaagaagtacgaaaagagtgatttgaggaatagggagtcccaatctga |
281 |
Q |
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| T |
38163862 |
tggaaaagaaaacggtgcaacaagtattcggtcaatgtccatacaaaaatgccgagaagcacgaaaagagggaggtgaggaacagggagtcccaatctga |
38163961 |
T |
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| Q |
282 |
aagagttata |
291 |
Q |
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| T |
38163962 |
aagagctata |
38163971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 27841513 - 27841584
Alignment:
| Q |
162 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
233 |
Q |
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| T |
27841513 |
aataggtcttagtttgaacatggaaagggagacggtgcaacaattatttgaccaatttccatatgaaaatgc |
27841584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 48189377 - 48189306
Alignment:
| Q |
162 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
233 |
Q |
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| T |
48189377 |
aatagatcttagtttgaacatggaaagggaaacggtgccacaattatttgaccaatttccataagaaaatgc |
48189306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 2741150 - 2741088
Alignment:
| Q |
162 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccata |
224 |
Q |
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| T |
2741150 |
aataggtcttagtttgaacatggaaagggatacggtgcaacaattatttgaccaatttccata |
2741088 |
T |
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