View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5671-Insertion-2 (Length: 133)
Name: NF5671-Insertion-2
Description: NF5671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5671-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 5e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 15066906 - 15067031
Alignment:
| Q |
7 |
aatattaattgataaataaagcaaaaaataaaggacatggcggattaggaatttcgtcgaatgttgtcttctaaattagttgttgataacatatcatcta |
106 |
Q |
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| T |
15066906 |
aatattaattgataaataaagcaaaaaataaaggacatggcggattaggaatttcgtcgaatgttgtcttctaaattagttgctgataacatatcatcta |
15067005 |
T |
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| Q |
107 |
aattatttaaccttgtcgcaacctgt |
132 |
Q |
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| T |
15067006 |
aattatttaaccttgtcgcaacctgt |
15067031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 15055181 - 15055306
Alignment:
| Q |
7 |
aatattaattgataaataaagcaaaaaataaaggacatggcggattaggaatttcgtcgaatgtt--gtcttctaaattagttgttgataacatatcatc |
104 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| || || ||||||| |
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| T |
15055181 |
aatattaattgataaataaatcaaaaaa--aaggacatggcggattaggaattttgtcgaatgttatgtcttctaaattagttgctgcgaatgtatcatc |
15055278 |
T |
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| Q |
105 |
taaattatttaaccttgtcgcaacctgt |
132 |
Q |
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| T |
15055279 |
tcaattatttaaccttgtcgcaacctgt |
15055306 |
T |
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