View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5671_low_2 (Length: 209)
Name: NF5671_low_2
Description: NF5671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5671_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 3e-99; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22831260 - 22831066
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22831260 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
22831161 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
22831160 |
aaccatgtttttggtgttgagcttgacactcgtaaaaattttgagtttgatgatatcaatgataatcatgttggaattgatatcaatgatttgaa |
22831066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22889521 - 22889327
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
22889521 |
tggaattgtttttgttatttctccaacaaaagggctaccagattcactaccaagtcaataccttggtctctttaacgattccaacagtggaaacagtagc |
22889422 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
22889421 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaacgataaccatgttggaattgatatcaatgatttgaa |
22889327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 22815255 - 22815062
Alignment:
| Q |
2 |
ggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||| ||||||||||| || |
|
|
| T |
22815255 |
ggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaacgattccaacaatggaaacagtaaca |
22815156 |
T |
|
| Q |
102 |
accatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
22815155 |
accatgtttttggtgttgagcttgacactcgtcaagatttgcagtttgatgatatcaatgataaccatgttggtatcgatatcaattatttgaa |
22815062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22840281 - 22840087
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||| || || |
|
|
| T |
22840281 |
tggaattgttttcgttatttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaaacggtggc |
22840182 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22840181 |
aaccatgtttttggtgttgaacttgatactcttctaagtagtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
22840087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22885821 - 22885629
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||| | || ||||| ||||||||| ||| | ||||||| ||||||||||||| |
|
|
| T |
22885821 |
tggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctct--aacaattccaacaatggaaacagtagc |
22885724 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22885723 |
agccatgtttttggtattgagcttgacactgatcaaaattttgagtttgatgaaatcaatgataaccatattggtattgatatcaatgatttgaa |
22885629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22898492 - 22898298
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| | ||||||| |||||| |||||| |
|
|
| T |
22898492 |
tggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagc |
22898393 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898392 |
aaccatgtttttggtgttgaacttgatactattattagtagtgagtttaatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
22898298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22805538 - 22805344
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||| || |
|
|
| T |
22805538 |
tggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctctttaatgattccaacaatggaaacagtggc |
22805439 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | || |||||||||||| |||| | | ||||||| | ||||||| ||||||||||| |||| |
|
|
| T |
22805438 |
aaccatgtttttggtgttgaacttgacacttctaaagattttgagtttggtgatgttgacaataaccacgatggtattaatatcaatgatctgaa |
22805344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22894173 - 22893979
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | | | |||| ||||||||||| || | ||||||| |||||| |||| |
|
|
| T |
22894173 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactccaaggttcataccttggtctctttgacgattccaacaatggaaatcctagc |
22894074 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894073 |
aaccacgtttttggtgttgaacttgatactattgaaaatcgtgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
22893979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22876145 - 22875951
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| | || |||| ||||||||||||| |
|
|
| T |
22876145 |
tggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaaacagtagc |
22876046 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||||||||||||||||||| ||||| || | | | ||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22876045 |
aaccatgtttttggtgttgaacttgattctgttttgactaatgagtttaatgatatcgatgataaccatgttggaattgatatcaatgatttgaa |
22875951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22809873 - 22809679
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||| ||||||||| | ||| |||||| |||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
22809873 |
tggaattgtatttgttgtttcacctacaaaagggctgccaaattcaaaagcaagtcaatatcttggtctctttaaccaatccaacaatggaaacagtagt |
22809774 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||||||||| |||||||| || || |||| || || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22809773 |
aaccatgttttcggtgttgaactagatactcttctaagtagtgagtttgatgatatcaatgataaccatattggtattgatatcaatgatttgaa |
22809679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 22858665 - 22858497
Alignment:
| Q |
27 |
caaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagcaaccatgtttttggtgttgagcttga |
126 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| |||||| ||||||| | |||||||||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
22858665 |
caaaagggctaccagattcacttccaaaccaataccttggtccctttaacgattccaacattggaaacactagcaaccatgtgtttgctgttgagcttga |
22858566 |
T |
|
| Q |
127 |
cactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||| |||| || |||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
22858565 |
cactattcaagatcttgagtttgatgatatcaataataaccatgctggtattgacatcaataatttgaa |
22858497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 22880793 - 22880631
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||| ||||||||||| |||| || |||||||||||||||||||| ||||||| | ||||| ||||||||||| || | ||||| |||||||| |||| |
|
|
| T |
22880793 |
tggacttgtttttgttgtttcaccaacaaaagggctaccaaattcgctaccaagtaaataccttggtctctttgacactttcaacactggaaacattagc |
22880694 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgat |
163 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
22880693 |
aaccatgtttttgctgttgagtttgacactgttcaagattttgagtttgacgatatcaatgat |
22880631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22913897 - 22913703
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||| || || | || |||| |||||||| | |
|
|
| T |
22913897 |
tggaattgtttttgttctttctccaacaaaagggttaccaaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaacaacaat |
22913798 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
||||||||||||||| | |||||||| ||| | ||| ||||| |||||||||||||| ||||||||||| ||||||||||||| |||||| |
|
|
| T |
22913797 |
aaccatgtttttggtttggagcttgatactattatgaatacggagttcgatgatatcaatgacaaccatgttggaattgatatcaatggtttgaa |
22913703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 22842365 - 22842264
Alignment:
| Q |
17 |
ctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagcaaccatgtttttggtg |
116 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||||| | ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
22842365 |
ctttcacctacaaaagggcaaccaaattcactaccaggtcaataccttggtctctttaacaattccaacaatggaaatagtagcaaccatgtttttggtg |
22842266 |
T |
|
| Q |
117 |
tt |
118 |
Q |
| |
|
|| |
|
|
| T |
22842265 |
tt |
22842264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 22922291 - 22922209
Alignment:
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatat |
183 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| |||| |||||||||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
22922291 |
aaccatctttttgctgttgagtttgacactgttcaagattttgagtttggtgatattaatgataaccatgttggtatagatat |
22922209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 22933300 - 22933386
Alignment:
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaat |
187 |
Q |
| |
|
|||||| |||||| ||| ||| |||||||| |||| | ||||||||||||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
22933300 |
aaccatatttttgctgtcgagtttgacactgctcaagactttgagtttgatgatattaatgataaccatgttggtatagacatcaat |
22933386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21150485 - 21150679
Alignment:
| Q |
1 |
tggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaaacagtagc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
21150485 |
tggaattgtttttgttatttctcctacaaaagagctaccaaattcactaccaacacaataccttggtctctttaacaattccaacaatggaaacagtagc |
21150584 |
T |
|
| Q |
101 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21150585 |
aaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgatatcaataataaccatgttggtattgatatcaatgatttgaa |
21150679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 15628336 - 15628281
Alignment:
| Q |
140 |
tttgagtttgatgatatcaatgataaccatgttggtattgatatcaatgatttgaa |
195 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
15628336 |
tttgggtttgatgatattaatgataaccatgttggtatagacatcaatggtttgaa |
15628281 |
T |
|
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