View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5672-Insertion-4 (Length: 298)

Name: NF5672-Insertion-4
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5672-Insertion-4
NF5672-Insertion-4
[»] chr7 (2 HSPs)
chr7 (6-286)||(36966770-36967046)
chr7 (6-167)||(2764656-2764817)
[»] chr6 (1 HSPs)
chr6 (86-272)||(2281350-2281535)
[»] chr2 (3 HSPs)
chr2 (29-185)||(17920601-17920758)
chr2 (6-141)||(35905635-35905770)
chr2 (200-259)||(17929371-17929430)
[»] scaffold0047 (1 HSPs)
scaffold0047 (110-260)||(73007-73157)
[»] chr1 (1 HSPs)
chr1 (32-203)||(14261336-14261508)
[»] chr4 (1 HSPs)
chr4 (6-154)||(55280281-55280429)
[»] chr5 (2 HSPs)
chr5 (131-260)||(18937602-18937731)
chr5 (29-122)||(18939629-18939723)
[»] chr3 (2 HSPs)
chr3 (29-182)||(40488484-40488644)
chr3 (51-105)||(24741420-24741474)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 36966770 - 36967046
Alignment:
Q  6 caaaaacttccactataacacctatggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatggtgattctaac 105  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36966770 caaaaacttccactataacacctatggttacgattaatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatgatgattctaac 36966869  T
Q  106 gactagagagcaaaccctaaataggtatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaaat 205  Q
     || |     |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36966870 aaccaa----caaaccctaaatagatatcccaaacagacacaaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaaat 36966965  T
Q  206 aacatactcaaatttcagctgaaaccgagatcgtttgccgaacacacttttgtcatcggaacccaaataatcttcctcttc 286  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36966966 aacatactcaaatttcagccgaaacggagatcgtttgccgaacacacttttgtcatcggaacccaaataatcttcctcttc 36967046  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 2764656 - 2764817
Alignment:
Q  6 caaaaacttccactataacacctatggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatggtgattctaac 105  Q
    |||||||||||||||| | |   |||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  2764656 caaaaacttccactatcataataatggttacaatcaacgtcttcctaaatctctaggaaccgacagtcatcaaataatcaccaattatggtgattctaac 2764755  T
Q  106 gactagagagcaaaccctaaataggtatcccaaacagacataaagagaagacaaaactactt 167  Q
     || ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||    
T  2764756 aaccagagagcaaactctaaataggtataccaaacagacacaaagagaagacaaaactactt 2764817  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 86 - 272
Target Start/End: Complemental strand, 2281535 - 2281350
Alignment:
Q  86 ccaactatggtgattctaacgactagagagcaaaccctaaataggtatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagta 185  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||||||  ||||||||| ||||| ||||| ||||||||||||||||||||| |||||    
T  2281535 ccaactatgatgattctaacagccagagagcaaaccctaaataggtatctgaaacagacacaaagaaaagaccaaactacttagaaaaattatcaaagta 2281436  T
Q  186 tcaaactagataacaaaaataacatactcaaatttcagctgaaaccgagatcgtttgccgaacacacttttgtcatcggaacccaaa 272  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||||    
T  2281435 tcaaactaggtaacaaaaataacatact-aaatttcagccgaaacggagatcgtttgccaaacacacttttgtcaccagaacccaaa 2281350  T

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Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 17920601 - 17920758
Alignment:
Q  29 atggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatca-ccaactatggtgattctaacgactagagagcaaaccctaaat 127  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  17920601 atggttacaatcaatgtcttcataaatctctaggaactaacaatcatcaaataatcatccaactatgatgattctaacaactagagagcaaactctaaat 17920700  T
Q  128 aggtatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagta 185  Q
    || ||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||    
T  17920701 agatatcccaaacaaacacaaacaaaagacaaaactacttagaaaaattatctaagta 17920758  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 35905770 - 35905635
Alignment:
Q  6 caaaaacttccactataacacctatggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatggtgattctaac 105  Q
    |||||||||||||||| |||   ||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  35905770 caaaaacttccactatcacaataatggttacaatcaatgtcttcctaaatctctagaaactgaaaatcatcaaataatcaccaactatggtgattctaac 35905671  T
Q  106 gactagagagcaaaccctaaataggtatcccaaaca 141  Q
     || |||||||||||||||||||| |||||||||||    
T  35905670 aaccagagagcaaaccctaaatagatatcccaaaca 35905635  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 17929371 - 17929430
Alignment:
Q  200 aaaaataacatactcaaatttcagctgaaaccgagatcgtttgccgaacacacttttgtc 259  Q
    |||||||||||||||||||||||| ||||||  |  || |||||||||||||||||||||    
T  17929371 aaaaataacatactcaaatttcagatgaaacgaaagtcatttgccgaacacacttttgtc 17929430  T

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Target: scaffold0047 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 110 - 260
Target Start/End: Complemental strand, 73157 - 73007
Alignment:
Q  110 agagagcaaaccctaaataggtatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaaat-aac 208  Q
    |||||||||| |||||| |||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||    
T  73157 agagagcaaatcctaaaaaggtatcccaaatagacacaaagagaagacaaaaccaattagaaaaattatctaagtatcaaactaggtaacaaaaataaac 73058  T
Q  209 atactcaaatttcagctgaaaccgagatcgtttgccgaacacacttttgtca 260  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  73057 atactcaaatttcagccgaaaccgagatcgtttg-cgaacacacttttgtca 73007  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 14261336 - 14261508
Alignment:
Q  32 gttacaatcaatgtcttcttaaatctctaggaaccgacaat-catcaaataatcaccaactatggtgattctaacgactagagagcaaaccctaaatagg 130  Q
    |||||||||||||||||||||||||||||||||  |||||  |||||||  ||||||||||||||| ||| |||| || ||||||||||||| ||||| |    
T  14261336 gttacaatcaatgtcttcttaaatctctaggaattgacaaaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatg 14261435  T
Q  131 tatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaa 203  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||||||||| || | || | ||||||||||    
T  14261436 tatcccaaacaaacacaaagagaagacaaaactacttagataaattatctaaataactaaattgataacaaaa 14261508  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 55280429 - 55280281
Alignment:
Q  6 caaaaacttccactataacacctatggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatggtgattctaac 105  Q
    |||||||||||||||  |||   ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55280429 caaaaacttccactaccacaataatggttacaatcaatgtcttcataaatctctaggaactgacaatcatcaaataatcaccaactatggtgattctaac 55280330  T
Q  106 gactagagagcaaaccctaaataggtatcccaaacagacataaagagaa 154  Q
     || | ||| || ||  |||||||||||||||| |||||| ||||||||    
T  55280329 aaccaaagaacagacattaaataggtatcccaaccagacacaaagagaa 55280281  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 18937731 - 18937602
Alignment:
Q  131 tatcccaaacagacataaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaaataacatactcaaatttcagctgaaac 230  Q
    |||| ||||||| |||||||||||| ||||||||||| | ||||||||||||| | ||||||||||||||||| ||| ||| |||||||||||| |||||    
T  18937731 tatctcaaacaggcataaagagaaggcaaaactacttggcaaaattatctaagcaacaaactagataacaaaactaatataatcaaatttcagccgaaac 18937632  T
Q  231 cgagatcgtttgccgaacacacttttgtca 260  Q
      | ||| ||||||||||||||||||||||    
T  18937631 aaatatcatttgccgaacacacttttgtca 18937602  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 18939723 - 18939629
Alignment:
Q  29 atggttacaatcaatgtcttcttaaatctctaggaaccgacaatcatcaaataatca-ccaactatggtgattctaacgactagagagcaaaccc 122  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| || || ||| ||||||    
T  18939723 atggttacaatcaatgtcttcctaaatctctaggaactgacaaacatcaaataatcacccaactatggtgattctaacaaccagggagaaaaccc 18939629  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 40488644 - 40488484
Alignment:
Q  29 atggttacaatcaatgtcttcttaaatctctaggaac--cgacaatcatcaaataatcaccaactatggtgattctaacgactagagagcaaaccctaaa 126  Q
    |||||||| |||||||||||  ||||||| || ||||  ||||||||||| ||| |||| ||| |||| ||||| |||| ||  | ||||||||||||||    
T  40488644 atggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaacaaatatgatgattataacaaccggtgagcaaaccctaaa 40488545  T
Q  127 taggtatcccaaacagac------ataaagagaagacaaaactacttagaaaaattatctaa 182  Q
     | |||||| ||||||||      | ||||||||||||||||||||||||||||||||||||    
T  40488544 -aagtatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaa 40488484  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 24741420 - 24741474
Alignment:
Q  51 taaatctctaggaaccgacaatcatcaaataatcaccaactatggtgattctaac 105  Q
    |||||||||||| |||||||| ||||||| ||||| ||||||||  |||||||||    
T  24741420 taaatctctaggcaccgacaaacatcaaaaaatcaacaactatgaggattctaac 24741474  T

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