View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672-Insertion-5 (Length: 250)
Name: NF5672-Insertion-5
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 32396421 - 32396178
Alignment:
| Q |
7 |
agcttacacgtattaaaaaattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaa |
106 |
Q |
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| T |
32396421 |
agcttacacgtattaaactattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaa |
32396322 |
T |
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| Q |
107 |
aaggtagccaaatagaccgattgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaac |
206 |
Q |
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| T |
32396321 |
aaggtagccaaatagaccgattgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaac |
32396222 |
T |
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| Q |
207 |
ccaataggatgcactgcaagtaaaatcaaataactcatcagcac |
250 |
Q |
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| T |
32396221 |
ccaataggatgcactgcaagtaaaatcaaataactcatcagcac |
32396178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 36139705 - 36139496
Alignment:
| Q |
26 |
attgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtgttgaatctccaaacaaaaggtagccaaatagaccg |
125 |
Q |
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| T |
36139705 |
attgagcaatgaaccaaatgaagaatcagcattgtggtcaaaatttattagaatgtctgattgagttgcatcaccaaataataggtaaccaaataggcct |
36139606 |
T |
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| Q |
126 |
attgtaaagtagacaacagcacaaaacattattgctaatcgaactgctgttttcatatgagatggactcgcaagctcaaacccaataggatgcactgcaa |
225 |
Q |
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| T |
36139605 |
attgaaaagtatatgagtgcacataggattaatgctattctcactgcttttttcatatctgatggttttccaagttcaaacccaattggatgtactgcat |
36139506 |
T |
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| Q |
226 |
gtaaaatcaa |
235 |
Q |
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| T |
36139505 |
gtagaatcaa |
36139496 |
T |
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